Ggra3936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3936.t1
Unique NameGgra3936.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:160152..160664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6211.A0A068YFA9
Preferred nameFAM96B
PFAMsFeS_assembly_P
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006790,GO:0007059,GO:0008150,GO:0008152,GO:0009987,GO:0015630,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0051186,GO:0070013,GO:0071817,GO:0071840,GO:0097361
Evalue2.18e-28
EggNOG OGsCOG5133@1|root,KOG3381@2759|Eukaryota,3A1NG@33154|Opisthokonta,3BQM5@33208|Metazoa,3D4ZQ@33213|Bilateria
DescriptionFamily with sequence similarity 96, member B
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3936Ggra3936Gracilaria gracilis GNS1m malegenetig00000908_pilon 160152..160664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1.start1Ggra3936.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 160152..160154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1.CDS1Ggra3936.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 160152..160664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1.exon1Ggra3936.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 160152..160664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1.stop1Ggra3936.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 160662..160664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1Ggra3936.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 160152..160664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=171bp
MRAAYGSSVHPDTLDNPNPEVKVLKREIRNPDEPLTLKEHIFEIIRDIRD
PEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMI
GLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVS
AAFENPKIMRLLRECTDNLP*
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spliced messenger RNA

>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000908_pilon:160152..160664+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCTGCCTATGGATCAAGCGTTCATCCTGATACCCTAGACAATCC
GAATCCCGAAGTGAAAGTATTGAAACGCGAAATCCGTAATCCTGACGAGC
CTCTTACTCTAAAAGAGCATATCTTCGAGATTATTCGCGACATTCGTGAC
CCGGAATATCCTCACTCTCTTGAAGAGCTAGGAGTCGTGAAAATAGAATA
CGTCGATGTTGAAAAGCCCCCCACCGACAGTCCAGGTTATGGAACAGTTT
CGATACAGTTCCATCCTACCGTTCCGCATTGCTCGCTTGCGTCAATGATC
GGTCTTAGCATACGCTCTAAGCTCAAGGAAAGCAAAGTTCTCGAACCGAA
GGGTGAGCATTACTACAAGCTGAAAGTTACTTGCATTGAAGGCACTCACA
ACAACTCCAGAGACATTAACAAGCAATTGTCGGATAAAGAGCGTGTTTCT
GCTGCATTCGAAAACCCAAAGATCATGAGACTATTGCGAGAATGCACAGA
CAATCTTCCATGA
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protein sequence of Ggra3936.t1

>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=171bp
MRAAYGSSVHPDTLDNPNPEVKVLKREIRNPDEPLTLKEHIFEIIRDIRD
PEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMI
GLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVS
AAFENPKIMRLLRECTDNLP*
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mRNA from alignment at tig00000908_pilon:160152..160664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00000908_pilon:160152..160664+ (Gracilaria gracilis GNS1m male)
ATGAGGGCTGCCTATGGATCAAGCGTTCATCCTGATACCCTAGACAATCC
GAATCCCGAAGTGAAAGTATTGAAACGCGAAATCCGTAATCCTGACGAGC
CTCTTACTCTAAAAGAGCATATCTTCGAGATTATTCGCGACATTCGTGAC
CCGGAATATCCTCACTCTCTTGAAGAGCTAGGAGTCGTGAAAATAGAATA
CGTCGATGTTGAAAAGCCCCCCACCGACAGTCCAGGTTATGGAACAGTTT
CGATACAGTTCCATCCTACCGTTCCGCATTGCTCGCTTGCGTCAATGATC
GGTCTTAGCATACGCTCTAAGCTCAAGGAAAGCAAAGTTCTCGAACCGAA
GGGTGAGCATTACTACAAGCTGAAAGTTACTTGCATTGAAGGCACTCACA
ACAACTCCAGAGACATTAACAAGCAATTGTCGGATAAAGAGCGTGTTTCT
GCTGCATTCGAAAACCCAAAGATCATGAGACTATTGCGAGAATGCACAGA
CAATCTTCCATGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:160152..160664+

>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00000908_pilon:160152..160664+ (Gracilaria gracilis GNS1m male)
ATGAGGGCTGCCTATGGATCAAGCGTTCATCCTGATACCCTAGACAATCC
GAATCCCGAAGTGAAAGTATTGAAACGCGAAATCCGTAATCCTGACGAGC
CTCTTACTCTAAAAGAGCATATCTTCGAGATTATTCGCGACATTCGTGAC
CCGGAATATCCTCACTCTCTTGAAGAGCTAGGAGTCGTGAAAATAGAATA
CGTCGATGTTGAAAAGCCCCCCACCGACAGTCCAGGTTATGGAACAGTTT
CGATACAGTTCCATCCTACCGTTCCGCATTGCTCGCTTGCGTCAATGATC
GGTCTTAGCATACGCTCTAAGCTCAAGGAAAGCAAAGTTCTCGAACCGAA
GGGTGAGCATTACTACAAGCTGAAAGTTACTTGCATTGAAGGCACTCACA
ACAACTCCAGAGACATTAACAAGCAATTGTCGGATAAAGAGCGTGTTTCT
GCTGCATTCGAAAACCCAAAGATCATGAGACTATTGCGAGAATGCACAGA
CAATCTTCCATGA
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