Ggra3929.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3929.t1
Unique NameGgra3929.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Homology
BLAST of Ggra3929.t1 vs. uniprot
Match: A0A2V3IQP7 (HTH myb-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQP7_9FLOR)

HSP 1 Score: 194 bits (493), Expect = 1.680e-55
Identity = 162/365 (44.38%), Postives = 203/365 (55.62%), Query Frame = 0
Query:    1 MDVTQHTRFLANPIALA-ASAELRANAAANASRIRELETILHSKRRELARLHSTKRLRATSITPPPSACITPLTS---SPRTIDYVKNTP-REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVATRSDKQVKAYAARYRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHSLTMYGRAPRRELPKSEHRLAPIMPADFRSSPGVHVRSPDVTPFSSSLSAFGGADADSGAECAPPSXXXXXPVRAAAGACEQACGAALMSDADDGTDADAEAEACATEPSVVESSSNADTDDALFADAHMGGDGLVRMMRAASEEMTRDHAERQVSLECTLLRDSDD-WTLADSLSGELLHDALL 359
            M+V+QH+  + +P A+  A+A LRA+A ANA+RIR+LE+++ S+RRELARL  TKR R  S TPPPS C TP  S   SPRTIDYV ++P REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAV TRS+KQVKAYAARYRRR                      XXXXXXXXXA  S  +     + +  ++EH+LA IMPA  RS+ GV  +  +  PF++       A A   A    P       V+                +A       +E +  +T    V   S+A  D ALF     GGD     M +   E+        VS++C+L  + D  W  AD    +LL D LL
Sbjct:    1 MEVSQHSPLVPDPTAVVTATAHLRAHAEANATRIRQLESMIRSERRELARLLGTKRTR--SSTPPPSQC-TPSASPVSSPRTIDYVNHSPTREMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQEAVRAFATAQLNAXXXXXXXXXAKQSFGLPVHTVQHKR-RAEHKLAHIMPAGMRSAGGVSAQQSE--PFNAFPMHMEAAVAPLLAPAEAPGKQEQTVVK-------------TEDEAQSDASIQSEGDGMSTRTDGV---SSAGADYALFDTQFAGGD--FEDMLSIPMELDSSVGTDDVSVQCSLFDEDDSTWNAADRQGDDLLGDRLL 341          
BLAST of Ggra3929.t1 vs. uniprot
Match: R7QAS6 (HTH myb-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAS6_CHOCR)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-18
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 0
Query:   77 RTIDYVKNTPREMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVATRSDKQVKAYAARYRRR 141
            RT+   +    +MAARGSHWSFAEKARFEAAL +YGPF WD II AV TR++KQVKAYAARYRRR
Sbjct:  239 RTLSCAEEESPQMAARGSHWSFAEKARFEAALQKYGPFVWDDIIFAVGTRTEKQVKAYAARYRRR 303          
The following BLAST results are available for this feature:
BLAST of Ggra3929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQP71.680e-5544.38HTH myb-type domain-containing protein n=1 Tax=Gra... [more]
R7QAS61.300e-1872.31HTH myb-type domain-containing protein n=1 Tax=Cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableGENE3D1.10.10.60coord: 96..158
e-value: 6.9E-8
score: 34.7
IPR001005SANT/Myb domainSMARTSM00717santcoord: 92..141
e-value: 4.0E-6
score: 36.4
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 96..138
e-value: 1.4832E-6
score: 42.5626
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 88..143
score: 10.639934
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 91..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:138236..139327 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3929.t1Ggra3929.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 138236..139327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3929.t1 ID=Ggra3929.t1|Name=Ggra3929.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MDVTQHTRFLANPIALAASAELRANAAANASRIRELETILHSKRRELARL
HSTKRLRATSITPPPSACITPLTSSPRTIDYVKNTPREMAARGSHWSFAE
KARFEAALHRYGPFAWDHIIRAVATRSDKQVKAYAARYRRRKKLAAKAQQ
EAVRAFAAAQLNAAAAAAAAAAANHSLTMYGRAPRRELPKSEHRLAPIMP
ADFRSSPGVHVRSPDVTPFSSSLSAFGGADADSGAECAPPSPPSPPPVRA
AAGACEQACGAALMSDADDGTDADAEAEACATEPSVVESSSNADTDDALF
ADAHMGGDGLVRMMRAASEEMTRDHAERQVSLECTLLRDSDDWTLADSLS
GELLHDALLAAPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf