Ggra3393.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3393.t1
Unique NameGgra3393.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Homology
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A2V3IPG6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPG6_9FLOR)

HSP 1 Score: 99.4 bits (246), Expect = 8.800e-20
Identity = 69/172 (40.12%), Postives = 99/172 (57.56%), Query Frame = 0
Query:   64 PNETDARYARFCEFAGRGGDARQREKV---------------STKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASKPQRSQFSKTLAIVHALLRRTASSRTCSNRNARGAAATAAVPLLQQSQSQPRTKSV--HLTLLCSPNALLLT 218
            P + D RYARF EF    GDA  ++ +               + + TIQ ++ AV +LL +LY KS RD+ K+N ELA+R +LP+ISKWNQQL++ HKASK ++S+ SK LA+V ALL+R  ++R   N+  R    +     +  SQ  P    +   L  + +PNALL T
Sbjct:   56 PEDHDFRYARFSEFNSNHGDAVVQDDLVREVLWQATRTVTTQNMESTIQVQIDAVSDLLSDLYTKSERDIVKRNEELAIRTSLPTISKWNQQLIKGHKASKLRQSEISKELAVVDALLKR--ATRRKKNQYRRSTQLS-----MSSSQHVPSLSFLLKQLFNIRAPNALLFT 220          
BLAST of Ggra3393.t1 vs. uniprot
Match: R7QSC1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSC1_CHOCR)

HSP 1 Score: 85.1 bits (209), Expect = 5.420e-15
Identity = 61/157 (38.85%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   35 RPAVTL---RASASDGPPPLPXXXXXXPLLKLPNETDARYARFCEFAGRGGD-----ARQREKV----------STKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASKPQRSQFSKTLAIVHALLRRTASSR 173
            RP V L   R S++ GP P             P+++D    RF EF  R GD     A +RE +          + + TIQ E+ AV + L ++Y +S RDL  +  ELA RA+L +ISKWNQQL++  K SK  RS+ SK LA+V  +LRR    R
Sbjct:   15 RPPVPLHPRRGSSAPGPHPRTTTCKLRFGSDTPSDSDGGLGRFREFTSRDGDHGVQDALEREVLWEVTRTATTHTLETTIQDELKAVSDSLADMYSRSDRDLPSRQEELARRASLANISKWNQQLIQGAKMSKSNRSEISKELAVVQVMLRRNRRGR 171          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A822B798 (RuvB-like helicase n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A822B798_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 9.230e-13
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            D G +K  VREQI  KV++W EEGKAE+VP VLF+DEV++LDIECFSF+++ + S
Sbjct:   16 DTGEIKSEVREQINDKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 70          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A2V3INL2 (RuvB-like helicase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL2_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 1.540e-12
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  371 SREDSALGGGKVDNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            SR+   L     D G +K  VREQI +KV++W EEGKAELVP VLF+DEV++LDIECFSFI+K I S
Sbjct:  237 SRQQGFLALFSGDTGEIKSEVREQIDIKVAEWREEGKAELVPGVLFIDEVHMLDIECFSFINKAIES 303          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A7S1T119 (RuvB-like helicase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T119_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.770e-12
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISK 433
            D G ++  VREQI MKV++W EEGKAE+VP VLF+DEV++LDIECFSF+++
Sbjct:   18 DTGEIRHEVREQIDMKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNR 68          
BLAST of Ggra3393.t1 vs. uniprot
Match: D2DSI7 (RuvB-like helicase (Fragment) n=1 Tax=Scylla paramamosain TaxID=85552 RepID=D2DSI7_SCYPA)

HSP 1 Score: 76.6 bits (187), Expect = 2.330e-12
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISK 433
            D G +KG VR+QI  KV++W EEGKAELVP VLFVDEV++LDIECFSF+++
Sbjct:   26 DTGEIKGEVRQQINAKVAEWREEGKAELVPGVLFVDEVHMLDIECFSFLNR 76          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A6V7LXI8 (RuvB-like helicase (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LXI8_9HYME)

HSP 1 Score: 75.9 bits (185), Expect = 3.200e-12
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            D G +K  VREQI  KV++W EEGKAE+VP VLF+DEV++LDIECFSF+++ + S
Sbjct:   53 DTGEIKSEVREQINAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 107          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A383V8V6 (RuvB-like helicase (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V8V6_TETOB)

HSP 1 Score: 76.3 bits (186), Expect = 3.270e-12
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            D G ++G VREQI  KV++W EEGKAE+VP VLF+DEV++LDIECFSF+++ + S
Sbjct:    9 DTGEIRGEVREQIDAKVAEWREEGKAEVVPGVLFIDEVHMLDIECFSFLNRALES 63          
BLAST of Ggra3393.t1 vs. uniprot
Match: A0A7M3Q972 (RuvB-like helicase n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q972_SPIER)

HSP 1 Score: 73.9 bits (180), Expect = 3.430e-12
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            D G +K  VR+QI  KV +W EEGKAE+VP VLFVDEV++LDIECFSF+++ + S
Sbjct:   18 DTGEIKSEVRDQINSKVLEWREEGKAEIVPGVLFVDEVHMLDIECFSFLNRALES 72          
BLAST of Ggra3393.t1 vs. uniprot
Match: ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C673089 (ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C673089)

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-12
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0
Query:  383 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 437
            D G +K  VREQI  KV++W EEGKAE++P VLF+DEV++LDIECFSF+++ + S
Sbjct:   19 DTGEIKAEVREQINAKVAEWREEGKAEVIPGVLFIDEVHMLDIECFSFLNRALES 73          
The following BLAST results are available for this feature:
BLAST of Ggra3393.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPG68.800e-2040.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QSC15.420e-1538.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A822B7989.230e-1361.82RuvB-like helicase n=1 Tax=Rotaria socialis TaxID=... [more]
A0A2V3INL21.540e-1261.19RuvB-like helicase n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S1T1191.770e-1264.71RuvB-like helicase (Fragment) n=1 Tax=Tetraselmis ... [more]
D2DSI72.330e-1268.63RuvB-like helicase (Fragment) n=1 Tax=Scylla param... [more]
A0A6V7LXI83.200e-1261.82RuvB-like helicase (Fragment) n=1 Tax=Bracon brevi... [more]
A0A383V8V63.270e-1261.82RuvB-like helicase (Fragment) n=1 Tax=Tetradesmus ... [more]
A0A7M3Q9723.430e-1261.82RuvB-like helicase n=1 Tax=Spirometra erinaceieuro... [more]
ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C6730893.600e-1260.00ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI0... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 368..441
e-value: 2.0E-14
score: 55.7
IPR010339TIP49, P-loop domainPFAMPF06068TIP49coord: 383..438
e-value: 2.9E-16
score: 59.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..60
IPR037942RuvB-like helicase 2PANTHERPTHR11093:SF2RUVB-LIKE 2coord: 372..436
IPR027238RuvB-likePANTHERPTHR11093RUVB-RELATED REPTIN AND PONTINcoord: 372..436

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:74319..76147 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1Ggra3393.t1Gracilaria gracilis GNS1m malemRNAtig00000905_pilon 74319..76147 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MTGDGSRRQRRPPKRQQRPQQQPLLPAIHSSARSRPAVTLRASASDGPPP
LPPEPPRKPLLKLPNETDARYARFCEFAGRGGDARQREKVSTKPTIQGEM
HAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASKP
QRSQFSKTLAIVHALLRRTASSRTCSNRNARGAAATAAVPLLQQSQSQPR
TKSVHLTLLCSPNALLLTCKRFELRRYGKFCIEPSKSHTTLDLLVLLKAR
DRVLCIGVVVPTHESIVVGTARVRELELEQVNQIALLDVELNAESACVPL
VAALSSHLEQLQNVQLRQSTRRFARSRIGHARSQLRYFLHRGGAALRVGT
LAAAAVRERCDVVRPGLVGRSREDSALGGGKVDNGGVKGAVREQIGMKVS
KWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISSHQPTQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR010339TIP49_P-loop
IPR037942RUVBL2
IPR027238RuvB-like