Ggra3393.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3393.t1
Unique NameGgra3393.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:74319..76147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJG0
PFAMsTIP49
Max annot lvl2759|Eukaryota
KEGG koko:K11338,ko:K11374
GOsGO:0000123,GO:0000228,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031011,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034622,GO:0034708,GO:0035097,GO:0035267,GO:0036211,GO:0042623,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097255,GO:0097346,GO:0140097,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1904949,GO:1990234,GO:2000112,GO:2001141
Evalue6.48e-13
EggNOG OGsCOG1224@1|root,KOG2680@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent 5'-3' DNA helicase activity
COG categoryK
BRITEko00000,ko01000,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3393Ggra3393Gracilaria gracilis GNS1m malegenetig00000905_pilon 74319..76147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1Ggra3393.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 74319..76147 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1.start1Ggra3393.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 74319..74321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1.CDS1Ggra3393.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 74319..74588 +
Ggra3393.t1.CDS2Ggra3393.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000905_pilon 74633..75018 +
Ggra3393.t1.CDS3Ggra3393.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000905_pilon 75475..76147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1.exon1Ggra3393.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 74319..74588 +
Ggra3393.t1.exon2Ggra3393.t1.exon2Gracilaria gracilis GNS1m maleexontig00000905_pilon 74633..75018 +
Ggra3393.t1.exon3Ggra3393.t1.exon3Gracilaria gracilis GNS1m maleexontig00000905_pilon 75475..76147 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1.intron1Ggra3393.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000905_pilon 74589..74632 +
Ggra3393.t1.intron2Ggra3393.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000905_pilon 75019..75474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3393.t1.stop1Ggra3393.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 76145..76147 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MTGDGSRRQRRPPKRQQRPQQQPLLPAIHSSARSRPAVTLRASASDGPPP
LPPEPPRKPLLKLPNETDARYARFCEFAGRGGDARQREKVSTKPTIQGEM
HAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASKP
QRSQFSKTLAIVHALLRRTASSRTCSNRNARGAAATAAVPLLQQSQSQPR
TKSVHLTLLCSPNALLLTCKRFELRRYGKFCIEPSKSHTTLDLLVLLKAR
DRVLCIGVVVPTHESIVVGTARVRELELEQVNQIALLDVELNAESACVPL
VAALSSHLEQLQNVQLRQSTRRFARSRIGHARSQLRYFLHRGGAALRVGT
LAAAAVRERCDVVRPGLVGRSREDSALGGGKVDNGGVKGAVREQIGMKVS
KWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISSHQPTQ*
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spliced messenger RNA

>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000905_pilon:74319..76147+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGTGACGGCAGCCGGCGGCAGCGGCGGCCTCCAAAGAGACAACA
GCGGCCACAGCAACAGCCGTTGCTGCCCGCCATACACTCCAGCGCGCGCA
GTCGCCCCGCCGTCACGTTGCGCGCCAGCGCTTCCGACGGGCCACCGCCG
TTGCCGCCAGAGCCACCGAGAAAGCCGCTACTCAAACTGCCGAACGAAAC
GGATGCGCGCTATGCGCGCTTTTGCGAGTTTGCCGGGCGTGGTGGCGACG
CGCGCCAGCGGGAGAAGGTGAGCACAAAGCCCACCATCCAGGGCGAGATG
CACGCCGTGTTCGAGCTTCTTTTCGAGCTGTACTTTAAATCGCGCCGCGA
CCTGCACAAGCAGAACCACGAGCTGGCTATGCGCGCCGCGCTGCCTTCCA
TCTCCAAGTGGAACCAGCAGCTCATGCGCCGCCACAAGGCATCCAAGCCG
CAGCGCTCGCAGTTCTCAAAGACGCTTGCTATCGTGCACGCTTTGCTCAG
ACGTACTGCTAGCTCGCGCACGTGCTCCAACCGCAACGCCCGTGGTgctg
ccgccaccgccgccgtgcctctgctgcaacagtcgcagtcgcagccgcGA
ACGAAGAGCGTGCACTTGACGTTGCTGTGTTCGCCCAATGCGCTCTTGCT
CACCTGCAAGCGCTTCGAGTTGCGCCGCTACGGCAAGTTTTGTATAGAAC
CATCCAAGTCACACACTACCCTGGATCTACTAGTCCTTCTCAAAGCGCGT
GATCGTGTTCTTTGCATCGGCGTTGTAGTACCCACGCATGAGTCCATCGT
TGTCGGCACGGCCCGTGTACGTGAGCTCGAACTTGAGCAAGTCAATCAGA
TCGCGCTCCTCGACGTTGAACTTAACGCTGAGAGCGCGTGCGTCCCACTC
GTGGCTGCTCTCTCTTCACATCTTGAACAGCTGCAAAACGTCCAGCTGCG
ACAATCTACCCGCCGTTTTGCTCGCAGTCGAATTGGCCATGCGCGATCGC
AGCTACGGTACTTCTTGCACCGTGGCGGCGCTGCGCTGCGCGTGGGGACG
CTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACGTCGTGAGACCCGGCTT
AGTTGGCCGAAGTCGAGAGGACAGCGCTCTGGGCGGTGGTAAAGTAGACA
ATGGTGGTGTCAAGGGCGCAGTACGCGAACAGATTGGCATGAAGGTTTCC
AAATGGTGGGAAGAAGGGAAGGCTGAACTTGTACCTGAAGTGCTTTTTGT
TGACGAAGTGTATCTGTTGGACATTGAATGCTTTTCTTTCATCAGCAAGA
TGATTTCATCACACCAACctactcaataa
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protein sequence of Ggra3393.t1

>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MTGDGSRRQRRPPKRQQRPQQQPLLPAIHSSARSRPAVTLRASASDGPPP
LPPEPPRKPLLKLPNETDARYARFCEFAGRGGDARQREKVSTKPTIQGEM
HAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASKP
QRSQFSKTLAIVHALLRRTASSRTCSNRNARGAAATAAVPLLQQSQSQPR
TKSVHLTLLCSPNALLLTCKRFELRRYGKFCIEPSKSHTTLDLLVLLKAR
DRVLCIGVVVPTHESIVVGTARVRELELEQVNQIALLDVELNAESACVPL
VAALSSHLEQLQNVQLRQSTRRFARSRIGHARSQLRYFLHRGGAALRVGT
LAAAAVRERCDVVRPGLVGRSREDSALGGGKVDNGGVKGAVREQIGMKVS
KWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISSHQPTQ*
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mRNA from alignment at tig00000905_pilon:74319..76147+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1829bp|location=Sequence derived from alignment at tig00000905_pilon:74319..76147+ (Gracilaria gracilis GNS1m male)
ATGACAGGTGACGGCAGCCGGCGGCAGCGGCGGCCTCCAAAGAGACAACA
GCGGCCACAGCAACAGCCGTTGCTGCCCGCCATACACTCCAGCGCGCGCA
GTCGCCCCGCCGTCACGTTGCGCGCCAGCGCTTCCGACGGGCCACCGCCG
TTGCCGCCAGAGCCACCGAGAAAGCCGCTACTCAAACTGCCGAACGAAAC
GGATGCGCGCTATGCGCGCTTTTGCGAGTTTGCCGGGCGTGGTGGCGACG
CGCGCCAGCGGGAGAAGGTGGTGAGCGATGTTCTGTGGGGCGCCACGACG
CTGCCACCACGCAGAGCACAAAGCCCACCATCCAGGGCGAGATGCACGCC
GTGTTCGAGCTTCTTTTCGAGCTGTACTTTAAATCGCGCCGCGACCTGCA
CAAGCAGAACCACGAGCTGGCTATGCGCGCCGCGCTGCCTTCCATCTCCA
AGTGGAACCAGCAGCTCATGCGCCGCCACAAGGCATCCAAGCCGCAGCGC
TCGCAGTTCTCAAAGACGCTTGCTATCGTGCACGCTTTGCTCAGACGTAC
TGCTAGCTCGCGCACGTGCTCCAACCGCAACGCCCGTGGTgctgccgcca
ccgccgccgtgcctctgctgcaacagtcgcagtcgcagccgcGAACGAAG
AGCGTGCACTTGACGTTGCTGTGTTCGCCCAATGCGCTCTTGCTCACCTG
GTGCTGTGCATCATTGCGCTCGAGTCGTGTGAGAACGTTGTGTCGCAGGA
GAATAGGCCGCCTACCTTGGCGCACTATTCGGCCTTCGGCGCGCTCTTCG
TGCTGTGCGCCGCCTACCTTCACGCCTTGCGTTCAGCGCATGCGCGCGCT
CTGAATCAGCTTCGTGGACGCTCGTCGTCGCCATTTGTCAGCGCTCTCTA
CCGCTGCAAGCGATGACCCGCAGTAAGCGATGACCTTTTTGTATCATATC
AAGTGTTCACTGAGTGCTTTTGTTTTCGAGTGCTTGTCGCTCCTCGCTCC
TTCGCTCGCGCCCTGCGCTGTATCCCAACGCTGCGAACGCGCGCTCGGTC
ACGgctgctatggcggctgctacctgtgcttgctgcctgttggctgccat
gcgcttcatgcttgTACTTTGCCACCACGTCGTTTTCTCAAGCTGTTTGC
ACACAGCAAGCGCTTCGAGTTGCGCCGCTACGGCAAGTTTTGTATAGAAC
CATCCAAGTCACACACTACCCTGGATCTACTAGTCCTTCTCAAAGCGCGT
GATCGTGTTCTTTGCATCGGCGTTGTAGTACCCACGCATGAGTCCATCGT
TGTCGGCACGGCCCGTGTACGTGAGCTCGAACTTGAGCAAGTCAATCAGA
TCGCGCTCCTCGACGTTGAACTTAACGCTGAGAGCGCGTGCGTCCCACTC
GTGGCTGCTCTCTCTTCACATCTTGAACAGCTGCAAAACGTCCAGCTGCG
ACAATCTACCCGCCGTTTTGCTCGCAGTCGAATTGGCCATGCGCGATCGC
AGCTACGGTACTTCTTGCACCGTGGCGGCGCTGCGCTGCGCGTGGGGACG
CTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACGTCGTGAGACCCGGCTT
AGTTGGCCGAAGTCGAGAGGACAGCGCTCTGGGCGGTGGTAAAGTAGACA
ATGGTGGTGTCAAGGGCGCAGTACGCGAACAGATTGGCATGAAGGTTTCC
AAATGGTGGGAAGAAGGGAAGGCTGAACTTGTACCTGAAGTGCTTTTTGT
TGACGAAGTGTATCTGTTGGACATTGAATGCTTTTCTTTCATCAGCAAGA
TGATTTCATCACACCAACctactcaataa
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Coding sequence (CDS) from alignment at tig00000905_pilon:74319..76147+

>Ggra3393.t1 ID=Ggra3393.t1|Name=Ggra3393.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000905_pilon:74319..76147+ (Gracilaria gracilis GNS1m male)
ATGACAGGTGACGGCAGCCGGCGGCAGCGGCGGCCTCCAAAGAGACAACA
GCGGCCACAGCAACAGCCGTTGCTGCCCGCCATACACTCCAGCGCGCGCA
GTCGCCCCGCCGTCACGTTGCGCGCCAGCGCTTCCGACGGGCCACCGCCG
TTGCCGCCAGAGCCACCGAGAAAGCCGCTACTCAAACTGCCGAACGAAAC
GGATGCGCGCTATGCGCGCTTTTGCGAGTTTGCCGGGCGTGGTGGCGACG
CGCGCCAGCGGGAGAAGGTGAGCACAAAGCCCACCATCCAGGGCGAGATG
CACGCCGTGTTCGAGCTTCTTTTCGAGCTGTACTTTAAATCGCGCCGCGA
CCTGCACAAGCAGAACCACGAGCTGGCTATGCGCGCCGCGCTGCCTTCCA
TCTCCAAGTGGAACCAGCAGCTCATGCGCCGCCACAAGGCATCCAAGCCG
CAGCGCTCGCAGTTCTCAAAGACGCTTGCTATCGTGCACGCTTTGCTCAG
ACGTACTGCTAGCTCGCGCACGTGCTCCAACCGCAACGCCCGTGGTgctg
ccgccaccgccgccgtgcctctgctgcaacagtcgcagtcgcagccgcGA
ACGAAGAGCGTGCACTTGACGTTGCTGTGTTCGCCCAATGCGCTCTTGCT
CACCTGCAAGCGCTTCGAGTTGCGCCGCTACGGCAAGTTTTGTATAGAAC
CATCCAAGTCACACACTACCCTGGATCTACTAGTCCTTCTCAAAGCGCGT
GATCGTGTTCTTTGCATCGGCGTTGTAGTACCCACGCATGAGTCCATCGT
TGTCGGCACGGCCCGTGTACGTGAGCTCGAACTTGAGCAAGTCAATCAGA
TCGCGCTCCTCGACGTTGAACTTAACGCTGAGAGCGCGTGCGTCCCACTC
GTGGCTGCTCTCTCTTCACATCTTGAACAGCTGCAAAACGTCCAGCTGCG
ACAATCTACCCGCCGTTTTGCTCGCAGTCGAATTGGCCATGCGCGATCGC
AGCTACGGTACTTCTTGCACCGTGGCGGCGCTGCGCTGCGCGTGGGGACG
CTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACGTCGTGAGACCCGGCTT
AGTTGGCCGAAGTCGAGAGGACAGCGCTCTGGGCGGTGGTAAAGTAGACA
ATGGTGGTGTCAAGGGCGCAGTACGCGAACAGATTGGCATGAAGGTTTCC
AAATGGTGGGAAGAAGGGAAGGCTGAACTTGTACCTGAAGTGCTTTTTGT
TGACGAAGTGTATCTGTTGGACATTGAATGCTTTTCTTTCATCAGCAAGA
TGATTTCATCACACCAACctactcaataa
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