Ggra2173.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2173.t1
Unique NameGgra2173.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:546256..546780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009038499.1
PFAMszf-RING_2,zf-rbx1
Max annot lvl2759|Eukaryota
KEGG koko:K19041
Evalue1.24e-09
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2173Ggra2173Gracilaria gracilis GNS1m malegenetig00000900_pilon 546256..546780 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1.start1Ggra2173.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 546256..546258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1.CDS1Ggra2173.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 546256..546780 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1.exon1Ggra2173.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 546256..546780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1.stop1Ggra2173.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 546778..546780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1Ggra2173.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 546256..546780 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=175bp
MQPHPNPNVQFAQIQNPYRVFRPSPGWNGAMPYNQQALPHFTIAQPPRAV
DARPFYQTSSNSSSLSRNHNFAQSPSQLSNRIDTEDLLSFEAPEKEKQNP
CPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAA
AGTESEQPNQPSSTSMFTGVVTQT*
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spliced messenger RNA

>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000900_pilon:546256..546780+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCATCCAAATCCCAACGTTCAGTTTGCTCAAATTCAGAATCC
GTACCGCGTGTTTCGACCCTCCCCCGGCTGGAATGGCGCTATGCCATACA
ACCAGCAAGCACTTCCACATTTCACGATAGCGCAGCCGCCGCGTGCTGTT
GATGCCCGCCCATTTTACCAAACTTCTTCAAACTCTTCTTCATTATCTCG
GAACCATAACTTCGCGCAGTCGCCATCGCAACTTAGCAACCGAATTGATA
CCGAAGACCTTCTCAGCTTCGAGGCACCTGAGAAGGAGAAGCAAAACCCT
TGTCCGATATGCCTGGGCCCGTTGGAAGAAGAGCAGGTCAGTACCGGCCA
ATGTCTGCATCTCATTCATTCTTCGTGTCTGAAGGGATGGTTGGCGAAGG
ACTTGAGATCAGCTTGTCCGGTATGTCGCATTCCATACCAAGATGCAGCC
GCAGGTACCGAATCCGAGCAACCCAACCAACCATCGTCAACTTCGATGTT
TACTGGTGTAGTTACGCAAACCTAA
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protein sequence of Ggra2173.t1

>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MQPHPNPNVQFAQIQNPYRVFRPSPGWNGAMPYNQQALPHFTIAQPPRAV
DARPFYQTSSNSSSLSRNHNFAQSPSQLSNRIDTEDLLSFEAPEKEKQNP
CPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAA
AGTESEQPNQPSSTSMFTGVVTQT*
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mRNA from alignment at tig00000900_pilon:546256..546780+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000900_pilon:546256..546780+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCATCCAAATCCCAACGTTCAGTTTGCTCAAATTCAGAATCC
GTACCGCGTGTTTCGACCCTCCCCCGGCTGGAATGGCGCTATGCCATACA
ACCAGCAAGCACTTCCACATTTCACGATAGCGCAGCCGCCGCGTGCTGTT
GATGCCCGCCCATTTTACCAAACTTCTTCAAACTCTTCTTCATTATCTCG
GAACCATAACTTCGCGCAGTCGCCATCGCAACTTAGCAACCGAATTGATA
CCGAAGACCTTCTCAGCTTCGAGGCACCTGAGAAGGAGAAGCAAAACCCT
TGTCCGATATGCCTGGGCCCGTTGGAAGAAGAGCAGGTCAGTACCGGCCA
ATGTCTGCATCTCATTCATTCTTCGTGTCTGAAGGGATGGTTGGCGAAGG
ACTTGAGATCAGCTTGTCCGGTATGTCGCATTCCATACCAAGATGCAGCC
GCAGGTACCGAATCCGAGCAACCCAACCAACCATCGTCAACTTCGATGTT
TACTGGTGTAGTTACGCAAACCTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:546256..546780+

>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000900_pilon:546256..546780+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCATCCAAATCCCAACGTTCAGTTTGCTCAAATTCAGAATCC
GTACCGCGTGTTTCGACCCTCCCCCGGCTGGAATGGCGCTATGCCATACA
ACCAGCAAGCACTTCCACATTTCACGATAGCGCAGCCGCCGCGTGCTGTT
GATGCCCGCCCATTTTACCAAACTTCTTCAAACTCTTCTTCATTATCTCG
GAACCATAACTTCGCGCAGTCGCCATCGCAACTTAGCAACCGAATTGATA
CCGAAGACCTTCTCAGCTTCGAGGCACCTGAGAAGGAGAAGCAAAACCCT
TGTCCGATATGCCTGGGCCCGTTGGAAGAAGAGCAGGTCAGTACCGGCCA
ATGTCTGCATCTCATTCATTCTTCGTGTCTGAAGGGATGGTTGGCGAAGG
ACTTGAGATCAGCTTGTCCGGTATGTCGCATTCCATACCAAGATGCAGCC
GCAGGTACCGAATCCGAGCAACCCAACCAACCATCGTCAACTTCGATGTT
TACTGGTGTAGTTACGCAAACCTAA
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