Ggra2173.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2173.t1
Unique NameGgra2173.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Homology
BLAST of Ggra2173.t1 vs. uniprot
Match: A0A2V3J0E8 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 129 bits (325), Expect = 2.600e-35
Identity = 72/154 (46.75%), Postives = 88/154 (57.14%), Query Frame = 0
Query:   23 PSPGWNGAMPYNQQALPHFTIAQPPRA---VDARPFYQTSSNSSSLSRNHNFAQSPSQLSNRIDTEDLLSFEAPEKEKQNPCPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAAAGTESEQPNQPSSTSMFTGVVTQ 173
            P P W+    Y+QQ L +  ++ PPRA   +   P Y     S++  ++H  A  P     RID +DLLSF+APEKEK NPCPICL PLE+EQVSTGQCLHLIH+SCL+ WLAKD R            AA      Q   P S +  T VV Q
Sbjct:    3 PPPNWSA---YDQQRLANVAVSHPPRAAHHIHYNPMYV----SAAPHQSHPSAAPPELQDPRIDVDDLLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKDSRXXXXXXXXXXXXAALNDSDPQTTAPQSATQLTSVVHQ 149          
BLAST of Ggra2173.t1 vs. uniprot
Match: R7QEA0 (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEA0_CHOCR)

HSP 1 Score: 111 bits (277), Expect = 7.810e-27
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0
Query:   81 RIDTEDLLSFEAPEKEKQNPCPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAAA 151
            R + EDL+S E  +++K NPCPICLG LEEE VSTGQCLHL+HSSCLK WLAKD +SACPVCR+ Y   AA
Sbjct:  158 RFNPEDLVSMEVSDRDKGNPCPICLGALEEEPVSTGQCLHLMHSSCLKSWLAKDTKSACPVCRVSYVQNAA 228          
BLAST of Ggra2173.t1 vs. uniprot
Match: A0A2V3IYA4 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYA4_9FLOR)

HSP 1 Score: 84.0 bits (206), Expect = 3.950e-17
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 0
Query:   87 LLSFEAPEKEKQNPCPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAA 150
            L SF A EK++  PC +CL  L    VS+GQCLH+IH+ CL+ WLAKD ++ACPVCR+P ++ A
Sbjct:  114 LASFRAAEKDRALPCTVCLEDLGSRGVSSGQCLHVIHTDCLQTWLAKDKKNACPVCRVPIEEGA 177          
BLAST of Ggra2173.t1 vs. uniprot
Match: A0A2V3J060 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J060_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 6.270e-17
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0
Query:   81 RIDTEDLLSFEAPEKEKQNPCPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAAA 151
            R D + L  FEA   E+Q  C ICL  LEEE VS GQCLHL+H++CL  WL KD+ S CPVCR+   ++A+
Sbjct:  121 RFDADSLKIFEAGPSERQQACAICLEQLEEETVSAGQCLHLMHTNCLASWLRKDINSNCPVCRVRIFESAS 191          
BLAST of Ggra2173.t1 vs. uniprot
Match: A0A2V3J043 (Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J043_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 7.170e-12
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0
Query:   83 DTEDLLSFEAPEKEKQNPCPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIP 145
            +T  L SF+  E+     C ICL  L +  VS+GQCLHL+H +CL  WLA   R+ CPVCR P
Sbjct:   73 ETLSLASFKVAERHASRECAICLEALADNVVSSGQCLHLLHQTCLNAWLASSPRALCPVCRHP 135          
The following BLAST results are available for this feature:
BLAST of Ggra2173.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J0E82.600e-3546.75RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7QEA07.810e-2769.01RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A2V3IYA43.950e-1754.69RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J0606.270e-1753.52RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J0437.170e-1249.21Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 101..142
e-value: 3.3E-5
score: 33.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..143
e-value: 7.3E-10
score: 39.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 101..143
score: 12.046688
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 89..159
e-value: 7.7E-14
score: 52.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..174
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 57..158
NoneNo IPR availablePANTHERPTHR22765:SF289OS12G0620100 PROTEINcoord: 57..158
NoneNo IPR availableCDDcd16448RING-H2coord: 101..143
e-value: 8.69497E-9
score: 47.4467
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 100..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:546256..546780 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2173.t1Ggra2173.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 546256..546780 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2173.t1 ID=Ggra2173.t1|Name=Ggra2173.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MQPHPNPNVQFAQIQNPYRVFRPSPGWNGAMPYNQQALPHFTIAQPPRAV
DARPFYQTSSNSSSLSRNHNFAQSPSQLSNRIDTEDLLSFEAPEKEKQNP
CPICLGPLEEEQVSTGQCLHLIHSSCLKGWLAKDLRSACPVCRIPYQDAA
AGTESEQPNQPSSTSMFTGVVTQT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD