Ggra2115.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2115.t1
Unique NameGgra2115.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Homology
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BLAST of Ggra2115.t1 vs. uniprot
Match: A0A662Y3V9 (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3V9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.350e-6
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:  233 CSVCRGVFSSECTLLQHHKRMHVRPYACKMVGCAASFSKQNHLSRHIRIVHNK 285
            C  C  VF S C L +H + M  RP+AC   GCA S+SK+ HL+RH+  VH +
Sbjct:   93 CDECHAVFESGCALTKHGREMRHRPFACHHEGCAKSYSKREHLTRHVVAVHEQ 145
The following BLAST results are available for this feature:
BLAST of Ggra2115.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A662Y3V92.350e-647.17Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 349..372
e-value: 0.063
score: 22.4
coord: 289..314
e-value: 0.19
score: 20.8
coord: 258..283
e-value: 0.0052
score: 26.0
coord: 231..254
e-value: 1.3
score: 18.0
coord: 320..343
e-value: 0.28
score: 20.3
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 320..343
e-value: 0.0057
score: 17.0
coord: 258..283
e-value: 0.0064
score: 16.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 233..254
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 322..343
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 351..372
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 291..314
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 260..283
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 320..348
score: 13.401258
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 289..319
score: 10.242228
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 349..377
score: 9.722651
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 231..259
score: 9.182289
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 258..288
score: 14.14945
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 318..347
e-value: 2.9E-7
score: 32.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 285..317
e-value: 2.0E-8
score: 35.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 202..284
e-value: 4.1E-9
score: 38.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 348..379
e-value: 9.3E-7
score: 30.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..103
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 210..368
NoneNo IPR availablePANTHERPTHR24390:SF159GH23506P-RELATEDcoord: 210..368
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 268..327
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 318..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:328811..329956 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1Ggra2115.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 328811..329956 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MSDLMSSAFANFLDHRRTSSFSRAPSVAPQPLPFPPLKLPVRLLHDSPPP
PKRMRSSTSTTSTLSLVSPLSVLTSSAQYAASSPPPPPPPPPPLPPHVPA
VHVAPHHQPPFNLAPFGERSRSLPALGALLSPLSAPHTPPLSVQLAPRVP
PQLPSPTPTPSPPPPHPRATLVVTRATRGRKRALEPMSSHGAPLLQQQPQ
QVPPPPQPPQQQQQQQPSSLSSSVTQLSACHECSVCRGVFSSECTLLQHH
KRMHVRPYACKMVGCAASFSKQNHLSRHIRIVHNKERPFACTEPGCASRF
GSKSHLGDHTRAVHMRLRNFKCNICNASWSKRFNLEKHIRIRHLGEKPFR
CSLCTLSFGTRSHVTRHELKVHKRSATLPPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf