Ggra2115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2115.t1
Unique NameGgra2115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:328811..329956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog61273.S3CUV9
PFAMszf-C2H2
Max annot lvl4751|Fungi
Evalue8.88e-05
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3AD3P@33154|Opisthokonta,3P443@4751|Fungi,3QWGB@4890|Ascomycota,213WW@147550|Sordariomycetes,3UPUG@5151|Ophiostomatales
Descriptionzinc finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2115Ggra2115Gracilaria gracilis GNS1m malegenetig00000900_pilon 328811..329956 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1.stop1Ggra2115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 328811..328813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1.CDS1Ggra2115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 328811..329956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1.exon1Ggra2115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 328811..329956 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1.start1Ggra2115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 329954..329956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2115.t1Ggra2115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 328811..329956 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MSDLMSSAFANFLDHRRTSSFSRAPSVAPQPLPFPPLKLPVRLLHDSPPP
PKRMRSSTSTTSTLSLVSPLSVLTSSAQYAASSPPPPPPPPPPLPPHVPA
VHVAPHHQPPFNLAPFGERSRSLPALGALLSPLSAPHTPPLSVQLAPRVP
PQLPSPTPTPSPPPPHPRATLVVTRATRGRKRALEPMSSHGAPLLQQQPQ
QVPPPPQPPQQQQQQQPSSLSSSVTQLSACHECSVCRGVFSSECTLLQHH
KRMHVRPYACKMVGCAASFSKQNHLSRHIRIVHNKERPFACTEPGCASRF
GSKSHLGDHTRAVHMRLRNFKCNICNASWSKRFNLEKHIRIRHLGEKPFR
CSLCTLSFGTRSHVTRHELKVHKRSATLPPK*
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spliced messenger RNA

>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000900_pilon:328811..329956- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACCTCATGAGCTCCGCGTTCGCCAACTTCCTGGATCATCGCCG
CACCTCCTCCTTCTCGCGCGCGCCGAGCGTGGCGCCGCAGCCGCTCCCAT
TCCCGCCGCTCAAGTTGCCAGTGCGTCTTCTGCACGACTCGCCGCCGCCG
CCCAAGCGCATGCGCAGTAGTACCTCCACCACCTCCACCCTGTCACTGGT
GTCGCCGCTCTCCGTACTCACCTCCTCCGCCCAGTACGCCGCGTCGTCGC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCACTACCGCCGCACGTGCCCGCC
GTGCACGTGGCGCCGCACCACCAGCCGCCCTTCAACTTGGCGCCGTTCGG
CGAGCGCTCGCGCTCGCTGCCGGCGCTGGGCGCGCTTCTATCGCCGCTCA
GCGCGCCGCATACGCCGCCGCTCAGCGTGCAGCTGGCGCCTCGTGTTCCG
CCGCAGCTGCCATCGCCGACGCCGACGCCGTCGCCGCCGCCGCCGCATCC
GCGTGCCACGTTGGTGGTGACGCGTGCGACGCGCGGCAGGAAGCGTGCAT
TGGAGCCGATGAGCAGCCACGGCGCGCCGCTGCTGCAGCAGCAGCCGCAG
CAGGTGCCGCCGCCGCCGCAGCCGCCGCAGCAGCAGCAGCAGCAGCAGCC
GAGCTCACTGTCGTCATCGGTGACTCAGCTCAGTGCTTGTCACGAGTGCT
CCGTGTGTCGCGGCGTGTTTTCGAGCGAGTGCACTTTACTGCAGCATCAC
AAGCGCATGCACGTGCGCCCGTACGCGTGCAAGATGGTGGGGTGTGCGGC
GTCGTTCAGCAAGCAGAACCACCTGTCGCGCCACATCCGCATCGTGCACA
ACAAGGAGCGGCCGTTCGCCTGCACGGAACCGGGCTGTGCCAGTCGGTTT
GGAAGCAAGAGTCACCTTGGCGATCACACTCGCGCCGTGCACATGAGACT
ACGCAACTTCAAGTGCAACATCTGCAACGCCAGCTGGAGCAAGAGATTCA
ACTTGGAGAAGCACATCCGCATCCGACATCTGGGCGAGAAGCCGTTCCGA
TGCTCTCTATGCACTCTGTCGTTTGGCACGCGGTCGCATGTTACGCGGCA
CGAGCTCAAGGTGCATAAGAGGAGCGCCACTCTGCCACCCAAGTAG
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protein sequence of Ggra2115.t1

>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MSDLMSSAFANFLDHRRTSSFSRAPSVAPQPLPFPPLKLPVRLLHDSPPP
PKRMRSSTSTTSTLSLVSPLSVLTSSAQYAASSPPPPPPPPPPLPPHVPA
VHVAPHHQPPFNLAPFGERSRSLPALGALLSPLSAPHTPPLSVQLAPRVP
PQLPSPTPTPSPPPPHPRATLVVTRATRGRKRALEPMSSHGAPLLQQQPQ
QVPPPPQPPQQQQQQQPSSLSSSVTQLSACHECSVCRGVFSSECTLLQHH
KRMHVRPYACKMVGCAASFSKQNHLSRHIRIVHNKERPFACTEPGCASRF
GSKSHLGDHTRAVHMRLRNFKCNICNASWSKRFNLEKHIRIRHLGEKPFR
CSLCTLSFGTRSHVTRHELKVHKRSATLPPK*
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mRNA from alignment at tig00000900_pilon:328811..329956-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000900_pilon:328811..329956- (Gracilaria gracilis GNS1m male)
ATGTCTGACCTCATGAGCTCCGCGTTCGCCAACTTCCTGGATCATCGCCG
CACCTCCTCCTTCTCGCGCGCGCCGAGCGTGGCGCCGCAGCCGCTCCCAT
TCCCGCCGCTCAAGTTGCCAGTGCGTCTTCTGCACGACTCGCCGCCGCCG
CCCAAGCGCATGCGCAGTAGTACCTCCACCACCTCCACCCTGTCACTGGT
GTCGCCGCTCTCCGTACTCACCTCCTCCGCCCAGTACGCCGCGTCGTCGC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCACTACCGCCGCACGTGCCCGCC
GTGCACGTGGCGCCGCACCACCAGCCGCCCTTCAACTTGGCGCCGTTCGG
CGAGCGCTCGCGCTCGCTGCCGGCGCTGGGCGCGCTTCTATCGCCGCTCA
GCGCGCCGCATACGCCGCCGCTCAGCGTGCAGCTGGCGCCTCGTGTTCCG
CCGCAGCTGCCATCGCCGACGCCGACGCCGTCGCCGCCGCCGCCGCATCC
GCGTGCCACGTTGGTGGTGACGCGTGCGACGCGCGGCAGGAAGCGTGCAT
TGGAGCCGATGAGCAGCCACGGCGCGCCGCTGCTGCAGCAGCAGCCGCAG
CAGGTGCCGCCGCCGCCGCAGCCGCCGCAGCAGCAGCAGCAGCAGCAGCC
GAGCTCACTGTCGTCATCGGTGACTCAGCTCAGTGCTTGTCACGAGTGCT
CCGTGTGTCGCGGCGTGTTTTCGAGCGAGTGCACTTTACTGCAGCATCAC
AAGCGCATGCACGTGCGCCCGTACGCGTGCAAGATGGTGGGGTGTGCGGC
GTCGTTCAGCAAGCAGAACCACCTGTCGCGCCACATCCGCATCGTGCACA
ACAAGGAGCGGCCGTTCGCCTGCACGGAACCGGGCTGTGCCAGTCGGTTT
GGAAGCAAGAGTCACCTTGGCGATCACACTCGCGCCGTGCACATGAGACT
ACGCAACTTCAAGTGCAACATCTGCAACGCCAGCTGGAGCAAGAGATTCA
ACTTGGAGAAGCACATCCGCATCCGACATCTGGGCGAGAAGCCGTTCCGA
TGCTCTCTATGCACTCTGTCGTTTGGCACGCGGTCGCATGTTACGCGGCA
CGAGCTCAAGGTGCATAAGAGGAGCGCCACTCTGCCACCCAAGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:328811..329956-

>Ggra2115.t1 ID=Ggra2115.t1|Name=Ggra2115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000900_pilon:328811..329956- (Gracilaria gracilis GNS1m male)
ATGTCTGACCTCATGAGCTCCGCGTTCGCCAACTTCCTGGATCATCGCCG
CACCTCCTCCTTCTCGCGCGCGCCGAGCGTGGCGCCGCAGCCGCTCCCAT
TCCCGCCGCTCAAGTTGCCAGTGCGTCTTCTGCACGACTCGCCGCCGCCG
CCCAAGCGCATGCGCAGTAGTACCTCCACCACCTCCACCCTGTCACTGGT
GTCGCCGCTCTCCGTACTCACCTCCTCCGCCCAGTACGCCGCGTCGTCGC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCACTACCGCCGCACGTGCCCGCC
GTGCACGTGGCGCCGCACCACCAGCCGCCCTTCAACTTGGCGCCGTTCGG
CGAGCGCTCGCGCTCGCTGCCGGCGCTGGGCGCGCTTCTATCGCCGCTCA
GCGCGCCGCATACGCCGCCGCTCAGCGTGCAGCTGGCGCCTCGTGTTCCG
CCGCAGCTGCCATCGCCGACGCCGACGCCGTCGCCGCCGCCGCCGCATCC
GCGTGCCACGTTGGTGGTGACGCGTGCGACGCGCGGCAGGAAGCGTGCAT
TGGAGCCGATGAGCAGCCACGGCGCGCCGCTGCTGCAGCAGCAGCCGCAG
CAGGTGCCGCCGCCGCCGCAGCCGCCGCAGCAGCAGCAGCAGCAGCAGCC
GAGCTCACTGTCGTCATCGGTGACTCAGCTCAGTGCTTGTCACGAGTGCT
CCGTGTGTCGCGGCGTGTTTTCGAGCGAGTGCACTTTACTGCAGCATCAC
AAGCGCATGCACGTGCGCCCGTACGCGTGCAAGATGGTGGGGTGTGCGGC
GTCGTTCAGCAAGCAGAACCACCTGTCGCGCCACATCCGCATCGTGCACA
ACAAGGAGCGGCCGTTCGCCTGCACGGAACCGGGCTGTGCCAGTCGGTTT
GGAAGCAAGAGTCACCTTGGCGATCACACTCGCGCCGTGCACATGAGACT
ACGCAACTTCAAGTGCAACATCTGCAACGCCAGCTGGAGCAAGAGATTCA
ACTTGGAGAAGCACATCCGCATCCGACATCTGGGCGAGAAGCCGTTCCGA
TGCTCTCTATGCACTCTGTCGTTTGGCACGCGGTCGCATGTTACGCGGCA
CGAGCTCAAGGTGCATAAGAGGAGCGCCACTCTGCCACCCAAGTAG
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