Ggra2122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2122.t1
Unique NameGgra2122.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:348495..350866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog68886.XP_009689544.1
PFAMsACBP,Ank_2,Ank_4
Max annot lvl422676|Aconoidasida
GOsGO:0002039,GO:0003674,GO:0005070,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006810,GO:0006839,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008219,GO:0009966,GO:0009967,GO:0009987,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0023051,GO:0023052,GO:0023056,GO:0030054,GO:0030674,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0033043,GO:0035556,GO:0035591,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0046902,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051059,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051716,GO:0051726,GO:0060090,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0071840,GO:0072331,GO:0072332,GO:0090559,GO:0097190,GO:0097193,GO:1900117,GO:1900119,GO:1900739,GO:1900740,GO:1901028,GO:1901030,GO:1901796,GO:1902531,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:2001233,GO:2001235
Evalue3.58e-07
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota,3YAR5@5794|Apicomplexa,3KCJE@422676|Aconoidasida,3Z624@5863|Piroplasmida
DescriptionAcyl CoA binding protein
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2122Ggra2122Gracilaria gracilis GNS1m malegenetig00000900_pilon 348495..350866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1Ggra2122.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 348495..350866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1.stop1Ggra2122.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 348495..348497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1.CDS1Ggra2122.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 348495..348890 -
Ggra2122.t1.CDS2Ggra2122.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 348936..349255 -
Ggra2122.t1.CDS3Ggra2122.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 350074..350866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1.exon1Ggra2122.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 348495..348890 -
Ggra2122.t1.exon2Ggra2122.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 348936..349255 -
Ggra2122.t1.exon3Ggra2122.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 350074..350866 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1.intron1Ggra2122.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 348891..348935 -
Ggra2122.t1.intron2Ggra2122.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 349256..350073 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2122.t1.start1Ggra2122.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 350864..350866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2122.t1 ID=Ggra2122.t1|Name=Ggra2122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=503bp
MTSFHHPHADMPDGDLHKAAKRGDLPTVQTLIAYGVELDSPGKDGHTALI
CAARKGHLLVVKALVAAGADMCATDDLGVTPLLYATAGAHTHVVKALLAR
GANANETTEFGTALHEAASKGNVELVDELLAHGADVHCNDDNNDTPLHSA
AGSNEETVAFRLWRAGADPLKQNSKKQTALSLLPEHSKVAEMMRTEPHLG
RSLPSAQIAQLHQRFTYLASGSYSGEQTVTAQDAIPELQRALMDAGTPSH
EDDVEEVVMEQMDKTANRHESGFALLLRHDADVNFRTEEGLSALRYALGK
RNPQIVQMLWLEDADPRGTRFEEFSTDIEHATIPLMTCDSTDKETFRKTD
EYIPRVRFFVLAKKSRNGTYKKQLDRENIEVFVETGDVDSRVSLLDSGDD
SPVSLLDSTSGMCFEDFESAFKTLKDFYASPERCAARKEHRNSFGNAIRM
QALLQSQIAVYLLRTVFKKLMGEVEDEGPKNYWPFARNHSWDEDALKDLL
ME*
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spliced messenger RNA

>Ggra2122.t1 ID=Ggra2122.t1|Name=Ggra2122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000900_pilon:348495..350866- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCGTTCCATCATCCGCACGCAGATATGCCCGACGGCGATCTGCA
CAAAGCCGCAAAGCGCGGTGACTTGCCGACAGTTCAGACGCTGATCGCAT
ACGGTGTCGAATTGGATAGCCCTGGAAAAGATGGGCACACCGCACTCATT
TGCGCGGCTCGCAAAGGCCATTTGCTTGTCGTCAAAGCGCTGGTCGCCGC
TGGCGCAGATATGTGTGCGACAGACGATTTAGGCGTAACACCTTTGCTCT
ATGCCACCGCAGGAGCACATACGCATGTTGTAAAAGCGCTGCTCGCGCGC
GGCGCAAACGCTAACGAAACAACCGAATTTGGCACCGCATTGCACGAAGC
CGCTTCTAAGGGCAACGTTGAATTAGTTGACGAGCTGCTGGCGCACGGAG
CAGACGTTCACTGCAATGACGATAACAACGATACGCCGCTTCACAGCGCG
GCCGGGTCCAACGAAGAGACAGTTGCCTTCCGTCTGTGGCGCGCTGGCGC
CGACCCTTTGAAGCAGAACTCCAAGAAGCAGACCGCGCTCTCGCTGCTAC
CGGAGCACAGCAAGGTTGCGGAGATGATGCGCACCGAGCCGCACCTCGGC
CGCTCTTTGCCTTCCGCGCAGATAGCTCAACTGCACCAGAGATTCACATA
CCTGGCATCCGGCTCTTACTCTGGTGAGCAGACAGTCACTGCCCAGGATG
CAATACCGGAGCTGCAAAGGGCCTTGATGGACGCAGGCACCCCTTCACAC
GAAGACGATGTGGAAGAAGTTGTCATGGAACAAATGGATAAAACGGCAAA
TAGACATGAGAGCGGCTTTGCCTTGCTGTTGAGGCACGATGCCGATGTGA
ACTTTCGTACTGAAGAAGGATTGTCGGCTTTGCGTTACGCTTTGGGCAAG
AGAAACCCACAAATCGTGCAGATGCTGTGGCTAGAAGATGCCGACCCTCG
CGGGACGCGGTTTGAGGAGTTTTCCACAGATATAGAACATGCCACTATCC
CGTTGATGACCTGCGATTCGACTGACAAGGAGACCTTCAGGAAGACTGAT
GAATATATACCGCGTGTCAGGTTTTTTGTTCTGGCAAAGAAGTCAAGAAA
CGGAACGTACAAGAAACAACTTGATAGGGAGAACATAGAAGTATTTGTGG
AAACGGGCGACGTGGACTCTCGAGTGTCCCTCTTGGACTCGGGCGATGAC
TCTCCAGTGTCCCTCTTGGACTCAACATCAGGAATGTGCTTTGAGGATTT
TGAGAGTGCGTTTAAGACGTTGAAAGATTTCTATGCGTCGCCAGAAAGAT
GTGCAGCGCGCAAAGAACATCGAAATAGTTTTGGTAATGCGATAAGAATG
CAAGCACTGTTGCAAAGCCAAATTGCAGTGTATCTGTTACGTACCGTGTT
TAAGAAGTTGATGGGGGAGGTTGAAGATGAAGGTCCCAAGAACTATTGGC
CATTTGCTCGCAACCACTCTTGGGACGAAGATGCCCTTAAAGATTTGCTC
ATGGAATAA
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protein sequence of Ggra2122.t1

>Ggra2122.t1 ID=Ggra2122.t1|Name=Ggra2122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=503bp
MTSFHHPHADMPDGDLHKAAKRGDLPTVQTLIAYGVELDSPGKDGHTALI
CAARKGHLLVVKALVAAGADMCATDDLGVTPLLYATAGAHTHVVKALLAR
GANANETTEFGTALHEAASKGNVELVDELLAHGADVHCNDDNNDTPLHSA
AGSNEETVAFRLWRAGADPLKQNSKKQTALSLLPEHSKVAEMMRTEPHLG
RSLPSAQIAQLHQRFTYLASGSYSGEQTVTAQDAIPELQRALMDAGTPSH
EDDVEEVVMEQMDKTANRHESGFALLLRHDADVNFRTEEGLSALRYALGK
RNPQIVQMLWLEDADPRGTRFEEFSTDIEHATIPLMTCDSTDKETFRKTD
EYIPRVRFFVLAKKSRNGTYKKQLDRENIEVFVETGDVDSRVSLLDSGDD
SPVSLLDSTSGMCFEDFESAFKTLKDFYASPERCAARKEHRNSFGNAIRM
QALLQSQIAVYLLRTVFKKLMGEVEDEGPKNYWPFARNHSWDEDALKDLL
ME*
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mRNA from alignment at tig00000900_pilon:348495..350866-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2122.t1 ID=Ggra2122.t1|Name=Ggra2122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2372bp|location=Sequence derived from alignment at tig00000900_pilon:348495..350866- (Gracilaria gracilis GNS1m male)
ATGACCTCGTTCCATCATCCGCACGCAGATATGCCCGACGGCGATCTGCA
CAAAGCCGCAAAGCGCGGTGACTTGCCGACAGTTCAGACGCTGATCGCAT
ACGGTGTCGAATTGGATAGCCCTGGAAAAGATGGGCACACCGCACTCATT
TGCGCGGCTCGCAAAGGCCATTTGCTTGTCGTCAAAGCGCTGGTCGCCGC
TGGCGCAGATATGTGTGCGACAGACGATTTAGGCGTAACACCTTTGCTCT
ATGCCACCGCAGGAGCACATACGCATGTTGTAAAAGCGCTGCTCGCGCGC
GGCGCAAACGCTAACGAAACAACCGAATTTGGCACCGCATTGCACGAAGC
CGCTTCTAAGGGCAACGTTGAATTAGTTGACGAGCTGCTGGCGCACGGAG
CAGACGTTCACTGCAATGACGATAACAACGATACGCCGCTTCACAGCGCG
GCCGGGTCCAACGAAGAGACAGTTGCCTTCCGTCTGTGGCGCGCTGGCGC
CGACCCTTTGAAGCAGAACTCCAAGAAGCAGACCGCGCTCTCGCTGCTAC
CGGAGCACAGCAAGGTTGCGGAGATGATGCGCACCGAGCCGCACCTCGGC
CGCTCTTTGCCTTCCGCGCAGATAGCTCAACTGCACCAGAGATTCACATA
CCTGGCATCCGGCTCTTACTCTGGTGAGCAGACAGTCACTGCCCAGGATG
CAATACCGGAGCTGCAAAGGGCCTTGATGGACGCAGGCACCCCTTCACAC
GAAGACGATGTGGAAGAAGTTGTCATGGAACAAATGGATAAAAGTAAGTG
CATACTTGGCTTGGCTGGCGTCATCAAATCCTTTTACCAGTTGCAGACGA
AGTACCAGCAGCCCCGAGAACTCCGGGTTCGGTTCAAGAATGCAACCCGG
TCGAAAACAGTGCTCAGGACCAAGCTGGCGAAGCACCTGTTGCGTGCGCA
CGTCAACGAGTCGGGCAGTGACACATGGTCATGGCCAACACCTACATCAC
CCACGAAGAGCCGTTTTAAATGGAACGAAGCTTGCGTGGATGCGCTTTTG
GCGCATCACAGCCAGAAAAGGAATGGTGTTGATGAGGAAAGCTTTGTTAA
AGTGGGAATGAAGGTTTTGTTCCCAAATAAATAGCTTCGTCTAACACCAT
TCTTGCCGATAACTTTCTTTCTGACATATGTCGTCCGTCTCTGACTCCTC
GCCTTCCTTTGTCTTTCCTTGAACTTGCCATCCGAAGCGACTCCCCTCCG
TTGACACTACACACGATGAGCGAGTACGAAAATCTGATGGAAGCCATATT
CCATGGAATGCTGGCGATGGTTCTGTCACTGCTTTCAAAGGGTGTCGACA
TCGATACGACCGATGAAGATAGTTGCACACCTTCAATATTTATTATGTGA
AGGCCACCATACTTGGAAAAGTGCAGATGGTTCAGGCGCTGATCAACGCG
GGGACTGATTTAGAGAAGAGAGACTCGTTCGGCCATACTGCTTTAGCAAC
TGCCGCGGGTGCGATGTTTCACAAAACAGCTGTTCTTTTGGTGAACGCCG
GTGCTGAAGTGCATACCTGGTGTGACAAACGAGTTTGGCTACACTCTGTT
GATTTTCGAAGCGGCAAATAGACATGAGAGCGGCTTTGCCTTGCTGTTGA
GGCACGATGCCGATGTGAACTTTCGTACTGAAGAAGGATTGTCGGCTTTG
CGTTACGCTTTGGGCAAGAGAAACCCACAAATCGTGCAGATGCTGTGGCT
AGAAGATGCCGACCCTCGCGGGACGCGGTTTGAGGAGTTTTCCACAGATA
TAGAACATGCCACTATCCCGTTGATGACCTGCGATTCGACTGACAAGGAG
ACCTTCAGGAAGACTGATGAATATATACCGCGTGTCAGGTTTTTTGTTCT
GGCAAAGAAGTCAAGAAACGGAACGTACAAGGTATGATACGAAGACGCTG
TTCATGAGCTGAAGTATTCGTTGCAGAAACAACTTGATAGGGAGAACATA
GAAGTATTTGTGGAAACGGGCGACGTGGACTCTCGAGTGTCCCTCTTGGA
CTCGGGCGATGACTCTCCAGTGTCCCTCTTGGACTCAACATCAGGAATGT
GCTTTGAGGATTTTGAGAGTGCGTTTAAGACGTTGAAAGATTTCTATGCG
TCGCCAGAAAGATGTGCAGCGCGCAAAGAACATCGAAATAGTTTTGGTAA
TGCGATAAGAATGCAAGCACTGTTGCAAAGCCAAATTGCAGTGTATCTGT
TACGTACCGTGTTTAAGAAGTTGATGGGGGAGGTTGAAGATGAAGGTCCC
AAGAACTATTGGCCATTTGCTCGCAACCACTCTTGGGACGAAGATGCCCT
TAAAGATTTGCTCATGGAATAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:348495..350866-

>Ggra2122.t1 ID=Ggra2122.t1|Name=Ggra2122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000900_pilon:348495..350866- (Gracilaria gracilis GNS1m male)
ATGACCTCGTTCCATCATCCGCACGCAGATATGCCCGACGGCGATCTGCA
CAAAGCCGCAAAGCGCGGTGACTTGCCGACAGTTCAGACGCTGATCGCAT
ACGGTGTCGAATTGGATAGCCCTGGAAAAGATGGGCACACCGCACTCATT
TGCGCGGCTCGCAAAGGCCATTTGCTTGTCGTCAAAGCGCTGGTCGCCGC
TGGCGCAGATATGTGTGCGACAGACGATTTAGGCGTAACACCTTTGCTCT
ATGCCACCGCAGGAGCACATACGCATGTTGTAAAAGCGCTGCTCGCGCGC
GGCGCAAACGCTAACGAAACAACCGAATTTGGCACCGCATTGCACGAAGC
CGCTTCTAAGGGCAACGTTGAATTAGTTGACGAGCTGCTGGCGCACGGAG
CAGACGTTCACTGCAATGACGATAACAACGATACGCCGCTTCACAGCGCG
GCCGGGTCCAACGAAGAGACAGTTGCCTTCCGTCTGTGGCGCGCTGGCGC
CGACCCTTTGAAGCAGAACTCCAAGAAGCAGACCGCGCTCTCGCTGCTAC
CGGAGCACAGCAAGGTTGCGGAGATGATGCGCACCGAGCCGCACCTCGGC
CGCTCTTTGCCTTCCGCGCAGATAGCTCAACTGCACCAGAGATTCACATA
CCTGGCATCCGGCTCTTACTCTGGTGAGCAGACAGTCACTGCCCAGGATG
CAATACCGGAGCTGCAAAGGGCCTTGATGGACGCAGGCACCCCTTCACAC
GAAGACGATGTGGAAGAAGTTGTCATGGAACAAATGGATAAAACGGCAAA
TAGACATGAGAGCGGCTTTGCCTTGCTGTTGAGGCACGATGCCGATGTGA
ACTTTCGTACTGAAGAAGGATTGTCGGCTTTGCGTTACGCTTTGGGCAAG
AGAAACCCACAAATCGTGCAGATGCTGTGGCTAGAAGATGCCGACCCTCG
CGGGACGCGGTTTGAGGAGTTTTCCACAGATATAGAACATGCCACTATCC
CGTTGATGACCTGCGATTCGACTGACAAGGAGACCTTCAGGAAGACTGAT
GAATATATACCGCGTGTCAGGTTTTTTGTTCTGGCAAAGAAGTCAAGAAA
CGGAACGTACAAGAAACAACTTGATAGGGAGAACATAGAAGTATTTGTGG
AAACGGGCGACGTGGACTCTCGAGTGTCCCTCTTGGACTCGGGCGATGAC
TCTCCAGTGTCCCTCTTGGACTCAACATCAGGAATGTGCTTTGAGGATTT
TGAGAGTGCGTTTAAGACGTTGAAAGATTTCTATGCGTCGCCAGAAAGAT
GTGCAGCGCGCAAAGAACATCGAAATAGTTTTGGTAATGCGATAAGAATG
CAAGCACTGTTGCAAAGCCAAATTGCAGTGTATCTGTTACGTACCGTGTT
TAAGAAGTTGATGGGGGAGGTTGAAGATGAAGGTCCCAAGAACTATTGGC
CATTTGCTCGCAACCACTCTTGGGACGAAGATGCCCTTAAAGATTTGCTC
ATGGAATAA
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