Ggra2072.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2072.t2
Unique NameGgra2072.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Homology
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A2V3IFJ9 (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFJ9_9FLOR)

HSP 1 Score: 277 bits (709), Expect = 1.420e-89
Identity = 157/266 (59.02%), Postives = 189/266 (71.05%), Query Frame = 0
Query:    1 MAPAFVLSSVKPVSFTTSFAGTVVSPNATQSRPSRPQRPTIVMERYSLDKYTKMSSPPQHPA------------------HKLNPFERKKPSKSYAPYAEAALSVATSPYFLIQG-INRPKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQNM 247
            M PAF+LSS+KPVS   SF G      A  S P    R    ME+YSLDKYTKMS+PP+ P                    K +PF R K +K  A Y+++AL+V+++P+FLIQG ++    FKGDPDT INR  Y+ +AD+YMAQCIT QYKMTAAP G YNVQCTEGTIRGQAE AR LALS  FRM QR+VSQKFADYTETRRKA+IGAHGC+YEE LL K PI+AR+++R+GAEAKS C+RYA    AAE+YMAA V +Q+M
Sbjct:    1 MDPAFMLSSIKPVSLGKSFTG------AALSCPRTLPRALWTMEKYSLDKYTKMSTPPESPPPGPSKPSAQWVSFTDSLKEKFSPF-RGKSTKVMANYSQSALTVSSTPFFLIQGKVSTMPPFKGDPDTTINR-NYMQDADRYMAQCITMQYKMTAAPLGVYNVQCTEGTIRGQAEDARNLALSTSFRMKQRTVSQKFADYTETRRKALIGAHGCTYEEKLLAKFPISARAYVRSGAEAKSTCTRYANGATAAEKYMAACVDKQSM 258          
BLAST of Ggra2072.t2 vs. uniprot
Match: R7QPQ9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPQ9_CHOCR)

HSP 1 Score: 165 bits (418), Expect = 9.480e-46
Identity = 104/225 (46.22%), Postives = 131/225 (58.22%), Query Frame = 0
Query:   30 QSRPSRPQRPTIVMERYSLDKYTKMSSPPQHPAHKLNPFERKKPSKSYAPYAEAAL-------SVATSPYFLIQGINRPKGFK--GDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQ 245
            ++ P+ P  P+ V   Y LD            A + NPFE  KP+K  AP             +  T  Y+ I+ I    G    G+PD   + +  +   D YMA+C+T QYKMTAAPYG Y ++CTEG ++ QAE +R  ALSAEFRM QRSV  KF DYTETRRKAII A GC+YEE L+   P+AAR+ +R  +EAK  C RYA  T  AE YMAASV +Q
Sbjct:   55 ETAPAVPSTPSSVWRSY-LDTVN---------AKQCNPFE--KPNKVSAPIVSRPFMNGVLYNAKMTKDYYEIRAIGTGFGSVPIGNPDKLCSPSPAV---DSYMAKCVTAQYKMTAAPYGVYTIKCTEGNVKQQAEESRSAALSAEFRMKQRSVKAKFGDYTETRRKAIIAAMGCTYEEKLVNLYPVAARAVVRGSSEAKGNCVRYAVSTSPAEEYMAASVDKQ 264          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A291FEC7 (LR gamma8 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEC7_GRIPA)

HSP 1 Score: 164 bits (416), Expect = 1.750e-45
Identity = 118/267 (44.19%), Postives = 144/267 (53.93%), Query Frame = 0
Query:    1 MAPAFVLS-SVKPVSFTTSFAGTVVSPNATQSRPSRPQRPTIVMERYSLDKYTKMS----------SPPQHPA----------HKLNPFERKKPSKSYAPYAEAALSVATSPYFLIQGINRPK-GFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQ 245
            M PAFV S + KPV  TTS   T  SP +  +R +    PT  M  YSLDKY +MS          SP                + NPF      +     ++      T+   ++  +N  + G  GDPD  +        AD+YMA CI KQYK  A P G Y  QCTEG +RGQAE AR  ALSA FRM QRS +QKF D+ E+RR A+IGAHGCSYEE+LL K P AAR++  A +EAK  C RYA  T  AE YMAA V +Q
Sbjct:    1 MEPAFVSSFAPKPV-ITTSL--TASSPLSVTARKNAVSTPT--MAAYSLDKYAQMSGANAVDTSGASPAASSTWWVAYRDSLKERFNPFRAPANPEVDVGKSKEYFFAQTAYGRILNMVNASRFGKGGDPDELVPPPG-AQPADQYMANCIVKQYKAMATPTGVYTTQCTEGVVRGQAEEARNAALSAAFRMKQRSSAQKFGDFCESRRMAVIGAHGCSYEESLLTKFPAAARAYTTASSEAKGNCVRYADGTSPAETYMAACVDKQ 261          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A5J4YX19 (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX19_PORPP)

HSP 1 Score: 110 bits (276), Expect = 1.850e-25
Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = 0
Query:  100 RPKGFKGDPDTNINRAKYLIE-ADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQ 245
            R   F      N ++AK ++E AD++ A+ +T QYK  A P G Y++QCTEGT++G A   R +A+SA FR  Q S + K     E RR AII +H C +EE+L V+ P  + +++    EA   CSRY       E YMAASV RQ
Sbjct:   55 RTVSFNARVARNKSQAKKILEKADEFFARSVTMQYKAFACPNGVYDIQCTEGTVKGAAYEKRAMAVSAAFRAKQASPAAKARALFENRRHAIIASHECQHEEDLFVRFPKLSAAYMMGKTEAMRTCSRYVVPDSLEEEYMAASVDRQ 201          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A1X6PKI7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKI7_PORUM)

HSP 1 Score: 109 bits (273), Expect = 4.060e-25
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0
Query:   76 SYAPYAEAALSVATSPYFLIQGINRPKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQ 245
            S  P   AA +    P  L+    R K   G      + A+   ++DKY+AQ I +QYK  AA  G YNVQCTEG++ G AEY R  A +  FR  Q++ SQK+ D    R  +I  AHGC  EE +LV NP AA S++    EA   C RYAT     E Y+A+ V  Q
Sbjct:   26 STTPAPAAAAATPAGPTMLLAARVR-KVSGGFSTKGGSYAQIASKSDKYLAQTINQQYKRVAAAGGVYNVQCTEGSVSGMAEYKRIAAKTRAFRDLQKTPSQKYGDLYAMRSASIQVAHGCHTEEKMLVNNPQAAASYVVGQREAMRQCVRYATPESTEENYIASKVQDQ 194          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A5J4YZH3 (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZH3_PORPP)

HSP 1 Score: 98.6 bits (244), Expect = 7.720e-21
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 0
Query:  111 NINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQN-MGGSTA 252
            N+N+A  L +AD + A+ +T + K  A PYG Y +QC EG+ +G A   R +ALSA FRMNQRS ++K     E RR A+I A    ++E   +K P  A + L A  E    C RYA      E ++AASV + N M G+TA
Sbjct:   70 NVNKA--LDKADMFFAKSVTMEGKAAAIPYGVYGIQCMEGSAKGMAHEKRAMALSAAFRMNQRSAAEKTGAMYENRRLALILAQN-DHQEKQYIKYPKLAAAALMASTEVTRACQRYAVPESIEEEFLAASVDKVNKMRGTTA 209          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A291FEC5 (LR gamma5 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEC5_GRIPA)

HSP 1 Score: 94.4 bits (233), Expect = 2.660e-19
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 0
Query:  113 NRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYM 238
            N +  L +AD+YMA+ + KQY   + PYGT+ VQCTEG+++  A+++R  AL+AEFR    S S+K  D  E R+ AI  +HGC +EE   V     +  +  + +EA   CSRYA+     E  M
Sbjct:   65 NISVILAKADEYMAKSVRKQYLAKSNPYGTFGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKNAISNSHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAM 190          
BLAST of Ggra2072.t2 vs. uniprot
Match: Q7XYZ7 (Phycoerythrin 31 kDa gamma subunit (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYZ7_GRIJA)

HSP 1 Score: 89.7 bits (221), Expect = 3.450e-18
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  113 NRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEENLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYM 238
            N A  L +AD YMA  + KQY   + P+G +NVQCTEG+++  A+++R  AL+  +R    S S+K  D  E+R+ AI  +HGC +EE   V        +  + +EA   CSRYA+     E  M
Sbjct:   56 NIASILSKADAYMAMSVRKQYLAKSNPFGVFNVQCTEGSVKFAADFSRVRALNLNYRTQAYSASKKTMDMFESRKSAIANSHGCHHEETQFVAYKKMTSMYNVSKSEALGSCSRYASPETVTEAAM 181          
BLAST of Ggra2072.t2 vs. uniprot
Match: A0A7S1EPV9 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPV9_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 5.770e-11
Identity = 49/141 (34.75%), Postives = 67/141 (47.52%), Query Frame = 0
Query:   48 LDKYTKMSSPPQHPAHKLNPFERKKPSKSYAPYAEAAL--SVATSPYFLIQGINRPKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEGTIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETR 186
            +DK+T   + P++       F  K P        +A L  +  TSP+F                 +I +  Y  +AD +M   I KQ K      G Y+ QC EGT +G AEY+R  ALS +FRM QRSVSQ  +DY  +R
Sbjct:   64 VDKWTSKVTTPKY-------FPMKTPPNPLPLNVKALLLSNAITSPFFQ------------STSDSIKQNYYQKKADVFMKNSIIKQMKAFGVENGVYSAQCIEGTTKGMAEYSRVAALSKQFRMKQRSVSQLASDYFSSR 185          
The following BLAST results are available for this feature:
BLAST of Ggra2072.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2V3IFJ91.420e-8959.02R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
R7QPQ99.480e-4646.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A291FEC71.750e-4544.19LR gamma8 n=1 Tax=Griffithsia pacifica TaxID=35689... [more]
A0A5J4YX191.850e-2542.18R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
A0A1X6PKI74.060e-2541.18Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YZH37.720e-2141.96R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
A0A291FEC52.660e-1940.48LR gamma5 n=1 Tax=Griffithsia pacifica TaxID=35689... [more]
Q7XYZ73.450e-1838.10Phycoerythrin 31 kDa gamma subunit (Fragment) n=1 ... [more]
A0A7S1EPV95.770e-1134.75Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..252
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:100801..101719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2Ggra2072.t2Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 100801..101719 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MAPAFVLSSVKPVSFTTSFAGTVVSPNATQSRPSRPQRPTIVMERYSLDK
YTKMSSPPQHPAHKLNPFERKKPSKSYAPYAEAALSVATSPYFLIQGINR
PKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEG
TIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEE
NLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQNMGGS
TA*
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