Ggra2072.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2072.t2
Unique NameGgra2072.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:100801..101719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2072Ggra2072Gracilaria gracilis GNS1m malegenetig00000900_pilon 100801..101858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2Ggra2072.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 100801..101719 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2.start1Ggra2072.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 100801..100803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2.CDS1Ggra2072.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 100801..100987 +
Ggra2072.t2.CDS2Ggra2072.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 101044..101597 +
Ggra2072.t2.CDS3Ggra2072.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 101702..101719 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2.exon1Ggra2072.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 100801..100987 +
Ggra2072.t2.exon2Ggra2072.t2.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 101044..101597 +
Ggra2072.t2.exon3Ggra2072.t2.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 101702..101719 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2.intron1Ggra2072.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 100988..101043 +
Ggra2072.t2.intron2Ggra2072.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 101598..101701 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2072.t2.stop1Ggra2072.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 101717..101719 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MAPAFVLSSVKPVSFTTSFAGTVVSPNATQSRPSRPQRPTIVMERYSLDK
YTKMSSPPQHPAHKLNPFERKKPSKSYAPYAEAALSVATSPYFLIQGINR
PKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEG
TIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEE
NLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQNMGGS
TA*
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spliced messenger RNA

>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000900_pilon:100801..101719+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTGCCTTCGTGCTCTCCTCCGTGAAACCAGTGTCGTTCACCAC
CTCCTTCGCCGGAACTGTCGTCTCGCCCAATGCCACACAATCTCGTCCCA
GCCGCCCCCAGCGCCCCACCATTGTCATGGAGAGATATTCTCTGGACAAG
TACACCAAGATGAGTTCCCCCCCCCAGCATCCCGCGCACAAGTTAAATCC
GTTTGAACGCAAGAAGCCATCAAAGTCGTACGCACCTTATGCGGAGGCCG
CCTTATCGGTCGCCACCTCCCCATACTTTCTCATCCAAGGAATCAACCGC
CCCAAGGGCTTCAAAGGCGATCCTGACACCAACATCAACCGAGCCAAGTA
CTTGATTGAGGCCGACAAGTACATGGCGCAGTGTATCACCAAGCAATACA
AGATGACCGCCGCACCGTACGGCACGTATAACGTGCAATGCACTGAAGGT
ACCATCCGCGGTCAAGCTGAATATGCGCGCAAGCTCGCCCTCTCTGCCGA
GTTTCGGATGAATCAGCGCTCTGTGTCCCAGAAGTTCGCCGACTATACAG
AAACGCGACGAAAGGCAATCATTGGCGCTCACGGGTGTAGCTATGAAGAA
AACCTGCTGGTCAAGAATCCGATCGCAGCTCGCTCTTTTCTGCGCGCCGG
CGCCGAGGCCAAGAGCGTCTGTTCTCGCTACGCCACTGAAACGCCCGCTG
CAGAGCGCTACATGGCTGCTAGTGTGGTGCGGCAGAACATGGGCGGCTCA
ACAGCCTAA
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protein sequence of Ggra2072.t2

>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MAPAFVLSSVKPVSFTTSFAGTVVSPNATQSRPSRPQRPTIVMERYSLDK
YTKMSSPPQHPAHKLNPFERKKPSKSYAPYAEAALSVATSPYFLIQGINR
PKGFKGDPDTNINRAKYLIEADKYMAQCITKQYKMTAAPYGTYNVQCTEG
TIRGQAEYARKLALSAEFRMNQRSVSQKFADYTETRRKAIIGAHGCSYEE
NLLVKNPIAARSFLRAGAEAKSVCSRYATETPAAERYMAASVVRQNMGGS
TA*
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mRNA from alignment at tig00000900_pilon:100801..101719+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=919bp|location=Sequence derived from alignment at tig00000900_pilon:100801..101719+ (Gracilaria gracilis GNS1m male)
ATGGCTCCTGCCTTCGTGCTCTCCTCCGTGAAACCAGTGTCGTTCACCAC
CTCCTTCGCCGGAACTGTCGTCTCGCCCAATGCCACACAATCTCGTCCCA
GCCGCCCCCAGCGCCCCACCATTGTCATGGAGAGATATTCTCTGGACAAG
TACACCAAGATGAGTTCCCCCCCCCAGCATCCCGCGCGTCAGCACCGTCC
ACTCCTTCCGCGACGTGGGTGTCGTATCTCGACACTGTCAAAGACAAGTT
AAATCCGTTTGAACGCAAGAAGCCATCAAAGTCGTACGCACCTTATGCGG
AGGCCGCCTTATCGGTCGCCACCTCCCCATACTTTCTCATCCAAGGAATC
AACCGCCCCAAGGGCTTCAAAGGCGATCCTGACACCAACATCAACCGAGC
CAAGTACTTGATTGAGGCCGACAAGTACATGGCGCAGTGTATCACCAAGC
AATACAAGATGACCGCCGCACCGTACGGCACGTATAACGTGCAATGCACT
GAAGGTACCATCCGCGGTCAAGCTGAATATGCGCGCAAGCTCGCCCTCTC
TGCCGAGTTTCGGATGAATCAGCGCTCTGTGTCCCAGAAGTTCGCCGACT
ATACAGAAACGCGACGAAAGGCAATCATTGGCGCTCACGGGTGTAGCTAT
GAAGAAAACCTGCTGGTCAAGAATCCGATCGCAGCTCGCTCTTTTCTGCG
CGCCGGCGCCGAGGCCAAGAGCGTCTGTTCTCGCTACGCCACTGAAACGC
CCGCTGCAGAGCGCTACATGGCTGCTAGTGTGGTGCGGCAGAACATGGTA
CGCAAGGTACCGGACGGCGTGTATGAGTTGATGTGCAGTGATGGTAATGA
GAGTGGCCTGGCCGAGTATAAAAGGGTCCAGGCACTTGCCGCGCAATTCA
GGGCGGCTCAACAGCCTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:100801..101719+

>Ggra2072.t2 ID=Ggra2072.t2|Name=Ggra2072.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000900_pilon:100801..101719+ (Gracilaria gracilis GNS1m male)
ATGGCTCCTGCCTTCGTGCTCTCCTCCGTGAAACCAGTGTCGTTCACCAC
CTCCTTCGCCGGAACTGTCGTCTCGCCCAATGCCACACAATCTCGTCCCA
GCCGCCCCCAGCGCCCCACCATTGTCATGGAGAGATATTCTCTGGACAAG
TACACCAAGATGAGTTCCCCCCCCCAGCATCCCGCGCACAAGTTAAATCC
GTTTGAACGCAAGAAGCCATCAAAGTCGTACGCACCTTATGCGGAGGCCG
CCTTATCGGTCGCCACCTCCCCATACTTTCTCATCCAAGGAATCAACCGC
CCCAAGGGCTTCAAAGGCGATCCTGACACCAACATCAACCGAGCCAAGTA
CTTGATTGAGGCCGACAAGTACATGGCGCAGTGTATCACCAAGCAATACA
AGATGACCGCCGCACCGTACGGCACGTATAACGTGCAATGCACTGAAGGT
ACCATCCGCGGTCAAGCTGAATATGCGCGCAAGCTCGCCCTCTCTGCCGA
GTTTCGGATGAATCAGCGCTCTGTGTCCCAGAAGTTCGCCGACTATACAG
AAACGCGACGAAAGGCAATCATTGGCGCTCACGGGTGTAGCTATGAAGAA
AACCTGCTGGTCAAGAATCCGATCGCAGCTCGCTCTTTTCTGCGCGCCGG
CGCCGAGGCCAAGAGCGTCTGTTCTCGCTACGCCACTGAAACGCCCGCTG
CAGAGCGCTACATGGCTGCTAGTGTGGTGCGGCAGAACATGGGCGGCTCA
ACAGCCTAA
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