Ggra4479.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4479.t1
Unique NameGgra4479.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Homology
BLAST of Ggra4479.t1 vs. uniprot
Match: A0A2V3INU6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INU6_9FLOR)

HSP 1 Score: 402 bits (1033), Expect = 3.780e-137
Identity = 196/347 (56.48%), Postives = 244/347 (70.32%), Query Frame = 0
Query:    5 AFCQSQFLPSKTTFGLPKTCRAYPVRVRVATRASAKPPEVPIPDVGLASKAGKTGTCCVNLWPLPVFGNYNWFLSVYDRELASNTGPFIINHDNNCDISISFQAAEKPVDKNEGKSHMSFSGIATGNINVPFALRKLEYEGTKYQLRLYEKGGGEPFFSRKNEIHIMEPK-SNPNEEQYASDPWKDPAPTFSVTARLSSFEVRDMFSGAGSEPRTHSALEYFAMNLFPIFPFNKYSCFVCVWRQSRGTCPVAIDKLNKGIRLSFFDPLELPAEVKTKPKTAARFAVKSFKGAVTDTGVHEQHQLLLRAIKASGTYEAASEADYRIVVRNDPGVFSPQRQNELWIQIV 350
            AFC  Q L ++        C +   R    TRASA+      PDVGL  K G+TGTCC NLWP+P+ G YNWFL+VYDR LAS+TG F++NHD   DI+I+F+   KP  ++  K+H SF G+A GNINV  AL  L Y+ T+YQLR +EKGG EPFF R+NE+HI  P  S+ + +   +DPW DPAPT+SV+    +FEVRD+F GAG+ PR  ++LEYF MNLFPIFPFNKYSCFVCVWRQ   T PVAIDK N+GIRLSFFDPLE+P E++ KP   ARFAVK F GAVTD GVHE H  ++RAI+A    + AS  D+RIVV N PG+ S  R+NELW+++V
Sbjct:    2 AFCHPQILVNERRRKFAPKCSSK--RHLFVTRASAE-----TPDVGLVPKEGQTGTCCANLWPIPLLGGYNWFLNVYDRNLASSTGAFVVNHDCEKDITIAFEKDRKPSAEHGSKTHTSFGGVAAGNINVLSALSALGYDETRYQLRTFEKGGVEPFFIRRNEVHITRPNDSSKSSDNGPNDPWLDPAPTYSVSTEQPTFEVRDLFPGAGAGPRAATSLEYFTMNLFPIFPFNKYSCFVCVWRQRSDTSPVAIDKRNRGIRLSFFDPLEIPTELEDKPSPVARFAVKEFIGAVTDAGVHELHSQMIRAIEACENMKVASTTDFRIVVDNTPGILSSNRRNELWVEVV 341          
BLAST of Ggra4479.t1 vs. uniprot
Match: R7Q6Q7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6Q7_CHOCR)

HSP 1 Score: 324 bits (831), Expect = 5.940e-105
Identity = 167/353 (47.31%), Postives = 225/353 (63.74%), Query Frame = 0
Query:    4 PAFCQSQF-LPSKTTFGLPKTCRAYPVRVRVATRASAKPPEVPIPDVGLASKAGKTGTCCVNLWPLPVFGNYNWFLSVYDRELASNTGPFIINHDNNCD--ISISFQAAEKPVDKNEGKSHMSFSGIATGNINVPFALRKL-EYEGTKYQLRLYEKGGGEPFFSRKNEIHIMEPKSNPNEEQYA-SDPWKDPAPTFSVTARLSSFEVRDMFSGAGSEPRTHSALEYFAMNLFPIFPFNKYSCFVCVWRQSRGTCPVAIDKLNKGIRLSFFDPLELPAEV--KTKPKTAARFAVKSFKGAVTDTGVHEQHQLLLRAIKASGTYEAASEADYRIVVRNDPGVFSPQRQNELWIQI 349
            PAF    F  P    F  P + R    R   A         VPIPD GL S  G TGT C NL+PLP+ G Y WFL+VYDR +AS  GPF++    + D  + +SF   + P +K+   SH +F G+A GN+NV   L KL   +   Y L+L+EKG GEPF+ R+NE+H+ +P   P    +A SD W++ APTF + ++ S++++R ++SG G++PR  S  EYFAMNL PI+PF KYSC VCVW+Q +GT PVAIDK+N  +RLSFFDPLELP     K +P   A+FAVK+F GAVTDT V + H++LL A+  S + +  S+  +RIVV N P VF+P R+NELW+Q+
Sbjct:  114 PAFLPPAFPTPHSPRFRPPPSSRCPRFRPTAAA--------VPIPDAGLISSPGITGTACTNLFPLPILGRYGWFLNVYDRSVASKVGPFVVKAGPSQDSPLVLSFSPDQPPSEKDTASSHSAFPGVAAGNLNVAKILAKLGRGQSVPYSLKLFEKGAGEPFWKRRNEVHLADPADPP----FALSDAWQEAAPTFFIESKSSAYDIRHVYSGVGAKPRNSSRFEYFAMNLSPIWPFTKYSCVVCVWKQRKGTAPVAIDKVNGSLRLSFFDPLELPTSETDKNRPLPIAKFAVKTFYGAVTDTTVAKLHEVLLAALSKSPSIKPVSDTAFRIVVDNKPDVFTPSRKNELWVQL 454          
The following BLAST results are available for this feature:
BLAST of Ggra4479.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INU63.780e-13756.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q6Q75.940e-10547.31Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011256Regulatory factor, effector binding domain superfamilyGENE3D3.20.80.10Regulatory factor, effector binding domaincoord: 263..349
e-value: 1.7E-7
score: 33.0
IPR011256Regulatory factor, effector binding domain superfamilySUPERFAMILY55136Probable bacterial effector-binding domaincoord: 251..348
IPR006917SOUL haem-binding proteinPFAMPF04832SOULcoord: 275..348
e-value: 5.2E-7
score: 29.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:611691..612743 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4479.t1Ggra4479.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 611691..612743 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MQGPAFCQSQFLPSKTTFGLPKTCRAYPVRVRVATRASAKPPEVPIPDVG
LASKAGKTGTCCVNLWPLPVFGNYNWFLSVYDRELASNTGPFIINHDNNC
DISISFQAAEKPVDKNEGKSHMSFSGIATGNINVPFALRKLEYEGTKYQL
RLYEKGGGEPFFSRKNEIHIMEPKSNPNEEQYASDPWKDPAPTFSVTARL
SSFEVRDMFSGAGSEPRTHSALEYFAMNLFPIFPFNKYSCFVCVWRQSRG
TCPVAIDKLNKGIRLSFFDPLELPAEVKTKPKTAARFAVKSFKGAVTDTG
VHEQHQLLLRAIKASGTYEAASEADYRIVVRNDPGVFSPQRQNELWIQIV
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom_sf
IPR006917SOUL_haem-bd