Ggra4479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4479.t1
Unique Name	Ggra4479.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:611691..612743 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4479	Ggra4479	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 611691..612743 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4479.t1.start1	Ggra4479.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 611691..611693 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4479.t1.CDS1	Ggra4479.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 611691..612743 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4479.t1.exon1	Ggra4479.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 611691..612743 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4479.t1.stop1	Ggra4479.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 612741..612743 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4479.t1	Ggra4479.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 611691..612743 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:611691..612743+
coding sequence from alignment at tig00000898_pilon:611691..612743+

mRNA sequence

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MQGPAFCQSQFLPSKTTFGLPKTCRAYPVRVRVATRASAKPPEVPIPDVG
LASKAGKTGTCCVNLWPLPVFGNYNWFLSVYDRELASNTGPFIINHDNNC
DISISFQAAEKPVDKNEGKSHMSFSGIATGNINVPFALRKLEYEGTKYQL
RLYEKGGGEPFFSRKNEIHIMEPKSNPNEEQYASDPWKDPAPTFSVTARL
SSFEVRDMFSGAGSEPRTHSALEYFAMNLFPIFPFNKYSCFVCVWRQSRG
TCPVAIDKLNKGIRLSFFDPLELPAEVKTKPKTAARFAVKSFKGAVTDTG
VHEQHQLLLRAIKASGTYEAASEADYRIVVRNDPGVFSPQRQNELWIQIV
*

spliced messenger RNA

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000898_pilon:611691..612743+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGGCCCTGCCTTCTGTCAAAGCCAATTTCTTCCGAGTAAGACCAC
ATTCGGCCTCCCCAAAACATGCAGGGCATATCCGGTCCGAGTCCGAGTTG
CGACTCGAGCCTCTGCCAAGCCACCAGAGGTTCCCATACCAGACGTGGGG
TTGGCTTCCAAGGCAGGCAAAACTGGAACTTGCTGCGTGAATCTTTGGCC
ACTACCCGTATTTGGGAATTACAACTGGTTCCTAAGCGTATATGATCGAG
AGCTGGCATCGAATACCGGTCCGTTCATTATCAACCACGATAACAATTGT
GACATCAGCATATCCTTCCAAGCGGCAGAAAAACCGGTAGACAAAAACGA
AGGTAAGTCGCATATGAGCTTCTCAGGTATAGCAACAGGAAACATAAATG
TCCCATTCGCATTGAGAAAACTGGAATATGAGGGTACGAAATATCAACTT
CGCTTGTATGAAAAGGGCGGTGGCGAGCCGTTCTTCTCGAGAAAGAACGA
AATTCACATTATGGAACCGAAATCTAATCCCAATGAAGAACAGTATGCAA
GTGATCCATGGAAGGATCCGGCACCCACCTTTTCAGTGACTGCAAGACTT
TCGTCGTTTGAAGTACGAGATATGTTCAGTGGCGCGGGGTCCGAGCCACG
GACCCATTCAGCTCTGGAATACTTTGCCATGAATCTATTTCCAATATTCC
CTTTCAACAAGTATTCATGCTTCGTTTGCGTCTGGCGACAAAGCCGAGGA
ACATGCCCAGTCGCAATTGATAAGCTTAATAAGGGCATACGGTTATCATT
TTTTGACCCACTCGAACTTCCAGCAGAGGTTAAGACGAAGCCGAAAACGG
CAGCACGATTTGCAGTGAAAAGCTTCAAAGGAGCTGTTACCGACACTGGC
GTTCACGAGCAGCACCAGCTTTTGCTACGTGCAATTAAAGCGTCTGGGAC
TTACGAGGCTGCATCTGAAGCCGACTACAGGATAGTTGTCAGAAATGATC
CGGGTGTCTTCTCACCCCAGCGACAAAATGAACTATGGATTCAAATAGTG
TGA

protein sequence of Ggra4479.t1

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MQGPAFCQSQFLPSKTTFGLPKTCRAYPVRVRVATRASAKPPEVPIPDVG
LASKAGKTGTCCVNLWPLPVFGNYNWFLSVYDRELASNTGPFIINHDNNC
DISISFQAAEKPVDKNEGKSHMSFSGIATGNINVPFALRKLEYEGTKYQL
RLYEKGGGEPFFSRKNEIHIMEPKSNPNEEQYASDPWKDPAPTFSVTARL
SSFEVRDMFSGAGSEPRTHSALEYFAMNLFPIFPFNKYSCFVCVWRQSRG
TCPVAIDKLNKGIRLSFFDPLELPAEVKTKPKTAARFAVKSFKGAVTDTG
VHEQHQLLLRAIKASGTYEAASEADYRIVVRNDPGVFSPQRQNELWIQIV
*

mRNA from alignment at tig00000898_pilon:611691..612743+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000898_pilon:611691..612743+ (Gracilaria gracilis GNS1m male)
ATGCAAGGCCCTGCCTTCTGTCAAAGCCAATTTCTTCCGAGTAAGACCAC
ATTCGGCCTCCCCAAAACATGCAGGGCATATCCGGTCCGAGTCCGAGTTG
CGACTCGAGCCTCTGCCAAGCCACCAGAGGTTCCCATACCAGACGTGGGG
TTGGCTTCCAAGGCAGGCAAAACTGGAACTTGCTGCGTGAATCTTTGGCC
ACTACCCGTATTTGGGAATTACAACTGGTTCCTAAGCGTATATGATCGAG
AGCTGGCATCGAATACCGGTCCGTTCATTATCAACCACGATAACAATTGT
GACATCAGCATATCCTTCCAAGCGGCAGAAAAACCGGTAGACAAAAACGA
AGGTAAGTCGCATATGAGCTTCTCAGGTATAGCAACAGGAAACATAAATG
TCCCATTCGCATTGAGAAAACTGGAATATGAGGGTACGAAATATCAACTT
CGCTTGTATGAAAAGGGCGGTGGCGAGCCGTTCTTCTCGAGAAAGAACGA
AATTCACATTATGGAACCGAAATCTAATCCCAATGAAGAACAGTATGCAA
GTGATCCATGGAAGGATCCGGCACCCACCTTTTCAGTGACTGCAAGACTT
TCGTCGTTTGAAGTACGAGATATGTTCAGTGGCGCGGGGTCCGAGCCACG
GACCCATTCAGCTCTGGAATACTTTGCCATGAATCTATTTCCAATATTCC
CTTTCAACAAGTATTCATGCTTCGTTTGCGTCTGGCGACAAAGCCGAGGA
ACATGCCCAGTCGCAATTGATAAGCTTAATAAGGGCATACGGTTATCATT
TTTTGACCCACTCGAACTTCCAGCAGAGGTTAAGACGAAGCCGAAAACGG
CAGCACGATTTGCAGTGAAAAGCTTCAAAGGAGCTGTTACCGACACTGGC
GTTCACGAGCAGCACCAGCTTTTGCTACGTGCAATTAAAGCGTCTGGGAC
TTACGAGGCTGCATCTGAAGCCGACTACAGGATAGTTGTCAGAAATGATC
CGGGTGTCTTCTCACCCCAGCGACAAAATGAACTATGGATTCAAATAGTG
TGA

Coding sequence (CDS) from alignment at tig00000898_pilon:611691..612743+

>Ggra4479.t1 ID=Ggra4479.t1|Name=Ggra4479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000898_pilon:611691..612743+ (Gracilaria gracilis GNS1m male)
ATGCAAGGCCCTGCCTTCTGTCAAAGCCAATTTCTTCCGAGTAAGACCAC
ATTCGGCCTCCCCAAAACATGCAGGGCATATCCGGTCCGAGTCCGAGTTG
CGACTCGAGCCTCTGCCAAGCCACCAGAGGTTCCCATACCAGACGTGGGG
TTGGCTTCCAAGGCAGGCAAAACTGGAACTTGCTGCGTGAATCTTTGGCC
ACTACCCGTATTTGGGAATTACAACTGGTTCCTAAGCGTATATGATCGAG
AGCTGGCATCGAATACCGGTCCGTTCATTATCAACCACGATAACAATTGT
GACATCAGCATATCCTTCCAAGCGGCAGAAAAACCGGTAGACAAAAACGA
AGGTAAGTCGCATATGAGCTTCTCAGGTATAGCAACAGGAAACATAAATG
TCCCATTCGCATTGAGAAAACTGGAATATGAGGGTACGAAATATCAACTT
CGCTTGTATGAAAAGGGCGGTGGCGAGCCGTTCTTCTCGAGAAAGAACGA
AATTCACATTATGGAACCGAAATCTAATCCCAATGAAGAACAGTATGCAA
GTGATCCATGGAAGGATCCGGCACCCACCTTTTCAGTGACTGCAAGACTT
TCGTCGTTTGAAGTACGAGATATGTTCAGTGGCGCGGGGTCCGAGCCACG
GACCCATTCAGCTCTGGAATACTTTGCCATGAATCTATTTCCAATATTCC
CTTTCAACAAGTATTCATGCTTCGTTTGCGTCTGGCGACAAAGCCGAGGA
ACATGCCCAGTCGCAATTGATAAGCTTAATAAGGGCATACGGTTATCATT
TTTTGACCCACTCGAACTTCCAGCAGAGGTTAAGACGAAGCCGAAAACGG
CAGCACGATTTGCAGTGAAAAGCTTCAAAGGAGCTGTTACCGACACTGGC
GTTCACGAGCAGCACCAGCTTTTGCTACGTGCAATTAAAGCGTCTGGGAC
TTACGAGGCTGCATCTGAAGCCGACTACAGGATAGTTGTCAGAAATGATC
CGGGTGTCTTCTCACCCCAGCGACAAAATGAACTATGGATTCAAATAGTG
TGA