Ggra8480.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8480.t2
Unique NameGgra8480.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Homology
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BLAST of Ggra8480.t2 vs. uniprot
Match: A0A2V3ITE0 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITE0_9FLOR)

HSP 1 Score: 289 bits (740), Expect = 2.520e-92
Identity = 152/213 (71.36%), Postives = 170/213 (79.81%), Query Frame = 0 
Query:   15 DDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFAGLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDA-SXXXXXXXXXXXXXXXXXXXSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASGALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELDRDLDAVRRRILSSFQGDANNWDTNDM 226
            DD+SPW  VWRSASEL ESIVEMGQE AA+VGGQFAGLL+PG ARVRPPQVITRLA+PGMC+ALSQLSPDS  SDA S                   SSQE SS+ +  E      R  + + KPRLDLLFVFDASGA+SWRDYR++KEILS+PGG+IDNVQ +VHDGSR+GFVEYAYDSVVVSELDRD DAVRRRILSSFQGDANNWD+N+M
Sbjct:   60 DDESPWGQVWRSASELPESIVEMGQEVAASVGGQFAGLLRPGAARVRPPQVITRLAIPGMCMALSQLSPDSIESDAMSSNSGQSSEPPSFRSSRVSSSSQEHSSAVMRMETVSDKTRRNLAAYKPRLDLLFVFDASGAMSWRDYRKLKEILSSPGGIIDNVQSRVHDGSRIGFVEYAYDSVVVSELDRDSDAVRRRILSSFQGDANNWDSNNM 272
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BLAST of Ggra8480.t2 vs. uniprot
Match: R7QCF8 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCF8_CHOCR)

HSP 1 Score: 239 bits (611), Expect = 2.350e-69
Identity = 131/228 (57.46%), Postives = 157/228 (68.86%), Query Frame = 0 
Query:    3 SRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFAGLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASXXXXXXXXXXXXXXXXXXXSSQERSSSGLGAELAHRG----KRGAVVSEKPRLDLLFVFDASGALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELDRDLDAVRRRILSSFQGDANNWDTNDM 226
            S  + E ++ D DDDSPW  VW+SASEL E +V  G+  AA VGGQFAGL KPG ARVRPPQVITRLAVPGMC+ALSQL     GSD                     SS E +S       +  G    K G +  + P++DLLFVFDASG+LSWR+YR+MKE+L+ PGG++D++  + H GSR+GFVEYAYDSVVVSELDRD +AVRRRILSSFQGDANNWD + M
Sbjct:  695 SGYTSEREERDLDDDSPWDQVWKSASELPEMVVAAGEAVAAKVGGQFAGLFKPGAARVRPPQVITRLAVPGMCMALSQLP----GSDMMASASANSSELRSFKSSRFPSSHEATSGTKSGSPSENGVGSLKTGCL--DGPKVDLLFVFDASGSLSWREYRQMKEVLTKPGGLLDDLMSKTHSGSRVGFVEYAYDSVVVSELDRDEEAVRRRILSSFQGDANNWDRDGM 916
The following BLAST results are available for this feature:
BLAST of Ggra8480.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITE02.520e-9271.36VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7QCF82.350e-6957.46VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 226..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00198vWFAcoord: 140..224
e-value: 5.23107E-4
score: 37.5454
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 136..224
e-value: 7.0E-6
score: 28.1
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 132..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:833318..834081 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2Ggra8480.t2Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 833318..834081 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMKEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf