Ggra8480.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8480.t2
Unique NameGgra8480.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:833318..834081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8480Ggra8480Gracilaria gracilis GNS1m malegenetig00000041_pilon 833318..834724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2Ggra8480.t2Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 833318..834081 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2.start1Ggra8480.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 833318..833320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2.CDS1Ggra8480.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 833318..833994 +
Ggra8480.t2.CDS2Ggra8480.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 834069..834081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2.exon1Ggra8480.t2.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 833318..833994 +
Ggra8480.t2.exon2Ggra8480.t2.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 834069..834081 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2.intron1Ggra8480.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 833995..834068 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t2.stop1Ggra8480.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 834079..834081 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMKEQ*
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spliced messenger RNA

>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834081+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGAAAGAACAATGA
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protein sequence of Ggra8480.t2

>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMKEQ*
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mRNA from alignment at tig00000041_pilon:833318..834081+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834081+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGTACATATATGAAGTTGGAGATC
AGATGTGGGGAAATGCGTTAAGAAAAGTGGACAGCTTGGTGAATGATCCA
GGAAAGAACAATGA
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Coding sequence (CDS) from alignment at tig00000041_pilon:833318..834081+

>Ggra8480.t2 ID=Ggra8480.t2|Name=Ggra8480.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000041_pilon:833318..834081+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCAGGGTTAGCTTTGAAACAgatgatgatgacggtgatgatga
CTCACCATGGACTCATGTATGGCGCAGTGCATCTGAACTTTCTGAGTCAA
TTGTGGAAATGGGACAGGAAGCGGCTGCTGCAGTAGGGGGGCAATTTGCT
GGTCTTCTGAAGCCTGGGGGGGCTCGTGTACGTCCTCCACAAGTGATAAC
AAGGCTAGCTGTTCCTGGGATGTGCTTGGCACTGAGCCAGTTGTCTCCTG
ACTCTGCGGGATCCGACGCTTCTTCAACATCTGCCCAATCTTCTGATTCT
CCGTCTTTTCCGTCTTTATCTGCGTCGTCCTCGTCCCAGGAGCGATCAAG
TTCAGGACTAGGGGCAGAGCTTGCACATCGCGGAAAAAGGGGAGCTGTTG
TGAGTGAGAAACCTAGACTTGATCTTTTGTTTGTTTTCGATGCGTCTGGA
GCTCTTTCATGGAGAGATTACCGGAGAATGAAGGAAATTCTTTCCACTCC
TGGTGGTGTAATTGACAATGTGCAGAAGCAAGTTCATGATGGATCTCGTA
TGGGTTTTGTGGAATATGCTTATGATTCGGTGGTGGTTTCAGAGCTTGAC
AGGGATCTCGATGCGGTCAGGAGACGAATTCTGAGTTCATTCCAAGGCGA
TGCGAACAACTGGGACACTAACGATATGAAAGAACAATGA
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