Ggra4548.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4548.t1
Unique NameGgra4548.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:972897..973799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7234.FBpp0175811
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Max annot lvl33208|Metazoa
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Evalue0.000302
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,38ETU@33154|Opisthokonta,3BAEQ@33208|Metazoa,3CUJJ@33213|Bilateria,41U0S@6656|Arthropoda,3SFXI@50557|Insecta,44YW4@7147|Diptera
DescriptionCalcium ion binding
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4548Ggra4548Gracilaria gracilis GNS1m malegenetig00000898_pilon 972897..973799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1.stop1Ggra4548.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 972897..972899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1.CDS1Ggra4548.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 972897..973799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1.exon1Ggra4548.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 972897..973799 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1.start1Ggra4548.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 973797..973799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1Ggra4548.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 972897..973799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=301bp
MSQFPSNAYASPYAPAPPPQPPYVPPPPPPPPQHAPPSPYTAAPQYAYQQ
PSLYGASAPLPPQAQPPAYAAAPAPQYGYHGHAGYAAAPPAMQPPPSHAQ
PPPPRPIHYSSASPQSAQMTYRYVGGAPSSQDATSVAPPAPPPPLAPPPR
RTHPHSTARPPYYGAGYAPPPSNYAPSAYGGAPYMGAAGGAYANGAYRPA
GAPVMSFGAHSSQFAVGSPQWCLQTSHEARDAFIKADRDSSGFLDVQEFW
AVLQSLMGSLVSYQEALQYFAECDEDQNGRIAYNEFERLYVGEIARRRHY
*
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spliced messenger RNA

>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000898_pilon:972897..973799- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAATTCCCCTCCAACGCCTACGCCTCCCCGTACGCGCCGGCGCC
ACCGCCCCAACCGCCGTATGTACCACCACCTCCGCCGCCGCCGCCCCAGC
ACGCGCCGCCGTCGCCCTACACCGCCGCGCCGCAATACGCCTACCAACAG
CCCTCTCTGTACGGCGCCTCCGCGCCGCTGCCGCCGCAAGCGCAACCGCC
CGCGTACGCCGCCGCGCCCGCGCCGCAATACGGCTACCACGGCCACGCCG
GCTACGCCGCCGCGCCACCCGCCATGCAGCCACCCCCCTCGCACGCGCAG
CCGCCACCACCGCGCCCAATTCATTACTCTTCCGCGTCGCCGCAGTCGGC
GCAGATGACTTACCGGTACGTGGGCGGCGCGCCGTCGTCGCAGGACGCCA
CTTCTGTGGCACCGCCTGCGCCGCCGCCTCCTTTAGCGCCGCCGCCGCGA
CGCACGCACCCACACTCGACGGCTCGGCCGCCCTACTACGGCGCGGGCTA
CGCGCCGCCGCCGTCCAACTACGCGCCGTCGGCGTACGGCGGCGCGCCCT
ACATGGGCGCAGCTGGCGGCGCGTACGCCAACGGCGCATACCGGCCTGCT
GGCGCGCCCGTCATGTCGTTCGGCGCGCACTCGTCGCAGTTTGCGGTGGG
GTCGCCGCAATGGTGCCTGCAGACGAGCCACGAGGCGCGCGACGCGTTCA
TCAAGGCCGATCGCGACAGCAGCGGCTTTCTGGACGTGCAGGAGTTTTGG
GCGGTGCTGCAGAGTTTGATGGGCAGCTTGGTGAGCTACCAAGAAGCGCT
GCAATACTTTGCCGAGTGCGACGAGGACCAGAACGGACGCATTGCTTACA
ACGAGTTTGAACGACTTTACGTAGGAGAGATAGCCAGAAGACGACACTAC
TAG
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protein sequence of Ggra4548.t1

>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MSQFPSNAYASPYAPAPPPQPPYVPPPPPPPPQHAPPSPYTAAPQYAYQQ
PSLYGASAPLPPQAQPPAYAAAPAPQYGYHGHAGYAAAPPAMQPPPSHAQ
PPPPRPIHYSSASPQSAQMTYRYVGGAPSSQDATSVAPPAPPPPLAPPPR
RTHPHSTARPPYYGAGYAPPPSNYAPSAYGGAPYMGAAGGAYANGAYRPA
GAPVMSFGAHSSQFAVGSPQWCLQTSHEARDAFIKADRDSSGFLDVQEFW
AVLQSLMGSLVSYQEALQYFAECDEDQNGRIAYNEFERLYVGEIARRRHY
*
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mRNA from alignment at tig00000898_pilon:972897..973799-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000898_pilon:972897..973799- (Gracilaria gracilis GNS1m male)
ATGTCTCAATTCCCCTCCAACGCCTACGCCTCCCCGTACGCGCCGGCGCC
ACCGCCCCAACCGCCGTATGTACCACCACCTCCGCCGCCGCCGCCCCAGC
ACGCGCCGCCGTCGCCCTACACCGCCGCGCCGCAATACGCCTACCAACAG
CCCTCTCTGTACGGCGCCTCCGCGCCGCTGCCGCCGCAAGCGCAACCGCC
CGCGTACGCCGCCGCGCCCGCGCCGCAATACGGCTACCACGGCCACGCCG
GCTACGCCGCCGCGCCACCCGCCATGCAGCCACCCCCCTCGCACGCGCAG
CCGCCACCACCGCGCCCAATTCATTACTCTTCCGCGTCGCCGCAGTCGGC
GCAGATGACTTACCGGTACGTGGGCGGCGCGCCGTCGTCGCAGGACGCCA
CTTCTGTGGCACCGCCTGCGCCGCCGCCTCCTTTAGCGCCGCCGCCGCGA
CGCACGCACCCACACTCGACGGCTCGGCCGCCCTACTACGGCGCGGGCTA
CGCGCCGCCGCCGTCCAACTACGCGCCGTCGGCGTACGGCGGCGCGCCCT
ACATGGGCGCAGCTGGCGGCGCGTACGCCAACGGCGCATACCGGCCTGCT
GGCGCGCCCGTCATGTCGTTCGGCGCGCACTCGTCGCAGTTTGCGGTGGG
GTCGCCGCAATGGTGCCTGCAGACGAGCCACGAGGCGCGCGACGCGTTCA
TCAAGGCCGATCGCGACAGCAGCGGCTTTCTGGACGTGCAGGAGTTTTGG
GCGGTGCTGCAGAGTTTGATGGGCAGCTTGGTGAGCTACCAAGAAGCGCT
GCAATACTTTGCCGAGTGCGACGAGGACCAGAACGGACGCATTGCTTACA
ACGAGTTTGAACGACTTTACGTAGGAGAGATAGCCAGAAGACGACACTAC
TAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:972897..973799-

>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00000898_pilon:972897..973799- (Gracilaria gracilis GNS1m male)
ATGTCTCAATTCCCCTCCAACGCCTACGCCTCCCCGTACGCGCCGGCGCC
ACCGCCCCAACCGCCGTATGTACCACCACCTCCGCCGCCGCCGCCCCAGC
ACGCGCCGCCGTCGCCCTACACCGCCGCGCCGCAATACGCCTACCAACAG
CCCTCTCTGTACGGCGCCTCCGCGCCGCTGCCGCCGCAAGCGCAACCGCC
CGCGTACGCCGCCGCGCCCGCGCCGCAATACGGCTACCACGGCCACGCCG
GCTACGCCGCCGCGCCACCCGCCATGCAGCCACCCCCCTCGCACGCGCAG
CCGCCACCACCGCGCCCAATTCATTACTCTTCCGCGTCGCCGCAGTCGGC
GCAGATGACTTACCGGTACGTGGGCGGCGCGCCGTCGTCGCAGGACGCCA
CTTCTGTGGCACCGCCTGCGCCGCCGCCTCCTTTAGCGCCGCCGCCGCGA
CGCACGCACCCACACTCGACGGCTCGGCCGCCCTACTACGGCGCGGGCTA
CGCGCCGCCGCCGTCCAACTACGCGCCGTCGGCGTACGGCGGCGCGCCCT
ACATGGGCGCAGCTGGCGGCGCGTACGCCAACGGCGCATACCGGCCTGCT
GGCGCGCCCGTCATGTCGTTCGGCGCGCACTCGTCGCAGTTTGCGGTGGG
GTCGCCGCAATGGTGCCTGCAGACGAGCCACGAGGCGCGCGACGCGTTCA
TCAAGGCCGATCGCGACAGCAGCGGCTTTCTGGACGTGCAGGAGTTTTGG
GCGGTGCTGCAGAGTTTGATGGGCAGCTTGGTGAGCTACCAAGAAGCGCT
GCAATACTTTGCCGAGTGCGACGAGGACCAGAACGGACGCATTGCTTACA
ACGAGTTTGAACGACTTTACGTAGGAGAGATAGCCAGAAGACGACACTAC
TAG
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