Ggra4548.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4548.t1
Unique NameGgra4548.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length301
Homology
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BLAST of Ggra4548.t1 vs. uniprot
Match: A0A2V3J5H2 (Calmodulin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5H2_9FLOR)

HSP 1 Score: 155 bits (392), Expect = 1.220e-41
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 0 
Query:  210 HSSQFAVGSPQWCLQTSHEARDAFIKADRDSSGFLDVQEFWAVLQSLMGSLVSYQEALQYFAECDEDQNGRIAYNEFERLYVGEIARRR 298
            ++ Q+ VGS +WCLQT HEAR AF KADRD+SGFLDVQEFW+VLQSLMGSLVSYQEALQYFAECD D+NGRI YNEFERLYV EIARRR
Sbjct:  226 YNVQYPVGSREWCLQTQHEARQAFFKADRDASGFLDVQEFWSVLQSLMGSLVSYQEALQYFAECDADKNGRIGYNEFERLYVDEIARRR 314
The following BLAST results are available for this feature:
BLAST of Ggra4548.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5H21.220e-4182.02Calmodulin n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 90..106
score: 34.12
coord: 25..41
score: 42.35
coord: 55..76
score: 33.64
coord: 9..21
score: 36.92
NoneNo IPR availableGENE3D1.10.238.10coord: 211..296
e-value: 4.3E-13
score: 51.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..155
IPR002048EF-hand domainSMARTSM00054efh_1coord: 228..256
e-value: 0.0058
score: 25.9
coord: 265..293
e-value: 3.3
score: 13.6
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 229..290
e-value: 2.7E-8
score: 34.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 224..259
score: 11.891237
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 261..296
score: 8.627476
IPR002048EF-hand domainCDDcd00051EFhcoord: 228..286
e-value: 5.6931E-11
score: 55.2465
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 274..286
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 237..249
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 225..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:972897..973799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4548.t1Ggra4548.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 972897..973799 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4548.t1 ID=Ggra4548.t1|Name=Ggra4548.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MSQFPSNAYASPYAPAPPPQPPYVPPPPPPPPQHAPPSPYTAAPQYAYQQ
PSLYGASAPLPPQAQPPAYAAAPAPQYGYHGHAGYAAAPPAMQPPPSHAQ
PPPPRPIHYSSASPQSAQMTYRYVGGAPSSQDATSVAPPAPPPPLAPPPR
RTHPHSTARPPYYGAGYAPPPSNYAPSAYGGAPYMGAAGGAYANGAYRPA
GAPVMSFGAHSSQFAVGSPQWCLQTSHEARDAFIKADRDSSGFLDVQEFW
AVLQSLMGSLVSYQEALQYFAECDEDQNGRIAYNEFERLYVGEIARRRHY
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair