Ggra4354.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra4354.t1
Unique Name	Ggra4354.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	676

Homology

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BLAST of Ggra4354.t1 vs. uniprot
Match: A0A2V3ITR9 (Protein flightless-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITR9_9FLOR)

HSP 1 Score: 143 bits (360), Expect = 1.060e-33
Identity = 124/334 (37.13%), Postives = 171/334 (51.20%), Query Frame = 0

Query:  325 NSSQATHRRSLRLQDKHKPDSTISTAMIPFSQSFNTATQRCSPDSVEIPRSVATKPPRAITPSDSDDNVTVVQSKSIK-REKRRIF----VPYERTSLDYQQTLSQLRNGNTRYIKLSFSGISDGDLRNLFDVGINMPDLPSGGRHIELNNNRLCRITSHMFQRFRDMKVISLILSSNLLTQIDQSLVFCTELKTLDLSRNNLRSLPEQLGDLSNLLFLKVSDNKLTKLPSLYLLRKLXXXXXXXXXXXXXXXXXX-EAGNALTALDISGNQGFQSFPACCKNWTRLEDLILTGTEIFVYLTKKERKMRPKALIEELAGKSLEQLKNRTRKRKP 652
            N  Q   R S RL+DK  P        +  ++   +  Q   P+   +P S  T+ PR  T ++SDD VTVV S +   ++  R+F      Y++ + +    L ++     +YI LSF G+SD DLR L +     P +  GGRHIELNNNRL RIT  +F R   +KVISL LS N L  I  S+  C  L+TL+                                         XXXXXXXXXXXXXXX    +AG+ALTALDIS N  F   P  C+NWT LEDL+L GT++  +L++KE  +    L++E+AG+     + RTR+++P
Sbjct:   27 NQGQVVRRASERLKDKISPSDPTQVQFVHDTRRRVSTRQSTLPEHRSLPTSHTTRAPRPFTSTESDDAVTVVPSTATDPKQVIRLFNWQLAAYDKDNAN--SVLERMLREQPKYIDLSFLGLSDADLRALLEQPF--PPISKGGRHIELNNNRLQRITEFLFGRLHFLKVISLTLSCNKLKDIHPSISLCKHLRTLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVAQAGSALTALDISHNPSFNFLPKSCENWTVLEDLMLQGTQLHGHLSRKELGLSATRLVKEIAGRPCNSSRPRTRRKRP 356

The following BLAST results are available for this feature:

BLAST of Ggra4354.t1 vs. uniprot

BLAST of Ggra4354.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3ITR9	1.060e-33	37.13	Protein flightless-1 n=1 Tax=Gracilariopsis chorda...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 509..532 e-value: 0.36 score: 19.9 coord: 554..577 e-value: 1.3 score: 18.0
None	No IPR available	SMART	SM00364	LRR_bac_2	coord: 578..598 e-value: 180.0 score: 4.1 coord: 532..551 e-value: 0.21 score: 20.7 coord: 509..528 e-value: 18.0 score: 11.7 coord: 554..573 e-value: 13.0 score: 12.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 642..663
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..392
None	No IPR available	PANTHER	PTHR48051	FAMILY NOT NAMED	coord: 438..612
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 452..616
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 387..624 e-value: 3.0E-28 score: 100.2
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 491..545 e-value: 1.3E-7 score: 31.2
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 511..533 score: 8.073888
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 534..555 score: 7.735057

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:27319..29346 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4354.t1	Ggra4354.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000898_pilon 27319..29346 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=676bp
MSSAHSVPKPSPDASDNQKRPPSNTYAGGDWFVASPPSLQPNRAPHPPQL
LSRATQPPPPSPPPSAPHASDSAPNGPSVFQPRHRGQRYQPPQYRKPTNA
GQQEPSFSRTRRLPAAPIYMNNDALRTFQSRSAKTLNFSEVPAPLRFKNS
APPPPPAPARHKLDAHVVNLDDDTAPTAALTPYEKPPQLERNPISSLHNP
FQRQDDLPRVPKKEVAPSKNSSPDVKTFLNHTREAANSKAPVRLKTVRPN
RPSEQPKRSDMEAICVEDDPHPVVPQKPRPNLLPPQRPIVLPSRSASPAP
RSTPTAKRQLPSEDTRTLRKRPRPNSSQATHRRSLRLQDKHKPDSTISTA
MIPFSQSFNTATQRCSPDSVEIPRSVATKPPRAITPSDSDDNVTVVQSKS
IKREKRRIFVPYERTSLDYQQTLSQLRNGNTRYIKLSFSGISDGDLRNLF
DVGINMPDLPSGGRHIELNNNRLCRITSHMFQRFRDMKVISLILSSNLLT
QIDQSLVFCTELKTLDLSRNNLRSLPEQLGDLSNLLFLKVSDNKLTKLPS
LYLLRKLQILNVARNNLESFPEDVTEAGNALTALDISGNQGFQSFPACCK
NWTRLEDLILTGTEIFVYLTKKERKMRPKALIEELAGKSLEQLKNRTRKR
KPPSRYRESSEATTTVRKAKSVVEV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt