Ggra4354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4354.t1
Unique NameGgra4354.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length676
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:27319..29346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4354Ggra4354Gracilaria gracilis GNS1m malegenetig00000898_pilon 27319..29346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4354.t1.stop1Ggra4354.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 27319..27321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4354.t1.CDS1Ggra4354.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 27319..29346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4354.t1.exon1Ggra4354.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 27319..29346 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4354.t1.start1Ggra4354.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 29344..29346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4354.t1Ggra4354.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 27319..29346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=676bp
MSSAHSVPKPSPDASDNQKRPPSNTYAGGDWFVASPPSLQPNRAPHPPQL
LSRATQPPPPSPPPSAPHASDSAPNGPSVFQPRHRGQRYQPPQYRKPTNA
GQQEPSFSRTRRLPAAPIYMNNDALRTFQSRSAKTLNFSEVPAPLRFKNS
APPPPPAPARHKLDAHVVNLDDDTAPTAALTPYEKPPQLERNPISSLHNP
FQRQDDLPRVPKKEVAPSKNSSPDVKTFLNHTREAANSKAPVRLKTVRPN
RPSEQPKRSDMEAICVEDDPHPVVPQKPRPNLLPPQRPIVLPSRSASPAP
RSTPTAKRQLPSEDTRTLRKRPRPNSSQATHRRSLRLQDKHKPDSTISTA
MIPFSQSFNTATQRCSPDSVEIPRSVATKPPRAITPSDSDDNVTVVQSKS
IKREKRRIFVPYERTSLDYQQTLSQLRNGNTRYIKLSFSGISDGDLRNLF
DVGINMPDLPSGGRHIELNNNRLCRITSHMFQRFRDMKVISLILSSNLLT
QIDQSLVFCTELKTLDLSRNNLRSLPEQLGDLSNLLFLKVSDNKLTKLPS
LYLLRKLQILNVARNNLESFPEDVTEAGNALTALDISGNQGFQSFPACCK
NWTRLEDLILTGTEIFVYLTKKERKMRPKALIEELAGKSLEQLKNRTRKR
KPPSRYRESSEATTTVRKAKSVVEV*
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spliced messenger RNA

>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000898_pilon:27319..29346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCGCGCACTCGGTCCCCAAACCGTCGCCCGACGCCTCCGACAA
TCAAAAGCGCCCTCCATCCAACACGTACGCTGGCGGCGACTGGTTCGTTG
CTTCTCCCCCTTCACTTCAACCCAACCGCGCTCCACATCCGCCTCAACTG
CTATCGCGCGCCACGCAACCTCCACCTCCGTCCCCTCCCCCTTCTGCCCC
CCATGCTTCCGATTCCGCCCCAAATGGCCCTTCTGTCTTTCAGCCACGGC
ATCGTGGCCAGCGCTATCAACCCCCGCAGTATAGGAAACCCACCAATGCA
GGTCAACAGGAACCGTCTTTCTCACGCACTCGCCGCTTACCAGCCGCTCC
AATCTACATGAATAATGATGCTTTGCGGACCTTCCAAAGCAGGAGCGCCA
AAACTCTCAACTTCTCCGAAGTCCCTGCGCCATTGCGTTTCAAAAATTCC
GCTCCTCCTCCTCCTCCCGCACCCGCACGTCACAAGCTTGACGCTCATGT
GGTCAACCTCGACGATGATACTGCTCCAACTGCCGCCCTCACGCCTTATG
AGAAACCCCCTCAGCTCGAGAGAAACCCTATCTCTTCTCTACACAATCCT
TTTCAACGTCAAGATGACTTGCCTCGGGTCCCCAAGAAGGAGGTAGCCCC
CTCAAAGAACTCCTCCCCAGATGTGAAAACCTTTCTCAATCACACCAGAG
AGGCTGCCAATTCTAAAGCTCCTGTCCGGCTAAAGACCGTTCGGCCAAAC
CGCCCCTCAGAACAACCGAAACGTAGTGATATGGAGGCCATCTGTGTTGA
AGACGATCCACATCCTGTTGTGCCCCAAAAACCTCGACCCAATTTGCTCC
CCCCTCAGCGGCCGATTGTGCTCCCATCTCGCTCTGCCTCACCTGCACCT
AGATCGACTCCGACTGCAAAGCGACAACTCCCAAGCGAGGATACAAGGAC
TCTGAGAAAGCGCCCACGTCCAAATTCGTCTCAAGCCACGCACAGACGTT
CGCTTCGACTACAGGATAAACACAAGCCAGACTCCACAATTTCCACGGCC
ATGATTCCATTTTCGCAAAGTTTCAACACAGCAACCCAACGGTGTTCCCC
TGATTCGGTTGAAATACCTAGGTCTGTGGCCACCAAGCCTCCGCGAGCTA
TTACGCCATCAGATAGTGACGACAACGTTACCGTCGTTCAATCCAAGAGC
ATTAAGCGTGAGAAACGAAGAATATTCGTTCCGTATGAACGCACTTCGCT
TGACTATCAGCAGACCCTATCTCAATTGCGGAACGGAAATACACGGTACA
TCAAGCTTTCTTTCTCAGGAATCTCCGATGGTGACCTGCGGAATTTGTTC
GATGTTGGGATAAACATGCCTGATTTACCATCTGGCGGCCGTCACATCGA
ACTCAACAATAACCGCCTGTGTCGTATTACTTCTCATATGTTCCAACGTT
TCAGGGACATGAAGGTTATATCACTCATTCTATCATCTAACCTACTAACA
CAAATCGACCAGTCCTTAGTGTTTTGCACTGAACTTAAAACCCTGGACCT
CAGTCGCAATAACTTGAGGAGCCTCCCAGAACAACTTGGTGATTTGTCAA
ATTTACTTTTCCTGAAAGTCTCTGATAACAAACTCACGAAGCTTCCATCA
TTGTATCTACTTAGAAAGTTGCAGATTTTGAACGTTGCCAGAAACAATCT
TGAGTCCTTTCCGGAGGATGTAACTGAGGCGGGGAACGCTTTGACTGCGC
TTGACATTTCTGGCAATCAAGGTTTTCAGTCCTTCCCCGCGTGTTGCAAG
AACTGGACCCGCCTGGAAGACTTGATCCTGACAGGTACCGAAATTTTCGT
TTATCTAACAAAGAAGGAGCGCAAGATGCGGCCAAAGGCGCTCATAGAGG
AGTTGGCGGGGAAATCATTGGAACAGTTAAAGAATAGAACTAGAAAGAGG
AAACCACCGTCCCGCTATAGAGAGTCGTCAGAAGCAACAACAACTGTGAG
AAAAGCAAAAAGCGTTGTGGAAGTATAA
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protein sequence of Ggra4354.t1

>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=676bp
MSSAHSVPKPSPDASDNQKRPPSNTYAGGDWFVASPPSLQPNRAPHPPQL
LSRATQPPPPSPPPSAPHASDSAPNGPSVFQPRHRGQRYQPPQYRKPTNA
GQQEPSFSRTRRLPAAPIYMNNDALRTFQSRSAKTLNFSEVPAPLRFKNS
APPPPPAPARHKLDAHVVNLDDDTAPTAALTPYEKPPQLERNPISSLHNP
FQRQDDLPRVPKKEVAPSKNSSPDVKTFLNHTREAANSKAPVRLKTVRPN
RPSEQPKRSDMEAICVEDDPHPVVPQKPRPNLLPPQRPIVLPSRSASPAP
RSTPTAKRQLPSEDTRTLRKRPRPNSSQATHRRSLRLQDKHKPDSTISTA
MIPFSQSFNTATQRCSPDSVEIPRSVATKPPRAITPSDSDDNVTVVQSKS
IKREKRRIFVPYERTSLDYQQTLSQLRNGNTRYIKLSFSGISDGDLRNLF
DVGINMPDLPSGGRHIELNNNRLCRITSHMFQRFRDMKVISLILSSNLLT
QIDQSLVFCTELKTLDLSRNNLRSLPEQLGDLSNLLFLKVSDNKLTKLPS
LYLLRKLQILNVARNNLESFPEDVTEAGNALTALDISGNQGFQSFPACCK
NWTRLEDLILTGTEIFVYLTKKERKMRPKALIEELAGKSLEQLKNRTRKR
KPPSRYRESSEATTTVRKAKSVVEV*
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mRNA from alignment at tig00000898_pilon:27319..29346-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000898_pilon:27319..29346- (Gracilaria gracilis GNS1m male)
ATGAGCTCCGCGCACTCGGTCCCCAAACCGTCGCCCGACGCCTCCGACAA
TCAAAAGCGCCCTCCATCCAACACGTACGCTGGCGGCGACTGGTTCGTTG
CTTCTCCCCCTTCACTTCAACCCAACCGCGCTCCACATCCGCCTCAACTG
CTATCGCGCGCCACGCAACCTCCACCTCCGTCCCCTCCCCCTTCTGCCCC
CCATGCTTCCGATTCCGCCCCAAATGGCCCTTCTGTCTTTCAGCCACGGC
ATCGTGGCCAGCGCTATCAACCCCCGCAGTATAGGAAACCCACCAATGCA
GGTCAACAGGAACCGTCTTTCTCACGCACTCGCCGCTTACCAGCCGCTCC
AATCTACATGAATAATGATGCTTTGCGGACCTTCCAAAGCAGGAGCGCCA
AAACTCTCAACTTCTCCGAAGTCCCTGCGCCATTGCGTTTCAAAAATTCC
GCTCCTCCTCCTCCTCCCGCACCCGCACGTCACAAGCTTGACGCTCATGT
GGTCAACCTCGACGATGATACTGCTCCAACTGCCGCCCTCACGCCTTATG
AGAAACCCCCTCAGCTCGAGAGAAACCCTATCTCTTCTCTACACAATCCT
TTTCAACGTCAAGATGACTTGCCTCGGGTCCCCAAGAAGGAGGTAGCCCC
CTCAAAGAACTCCTCCCCAGATGTGAAAACCTTTCTCAATCACACCAGAG
AGGCTGCCAATTCTAAAGCTCCTGTCCGGCTAAAGACCGTTCGGCCAAAC
CGCCCCTCAGAACAACCGAAACGTAGTGATATGGAGGCCATCTGTGTTGA
AGACGATCCACATCCTGTTGTGCCCCAAAAACCTCGACCCAATTTGCTCC
CCCCTCAGCGGCCGATTGTGCTCCCATCTCGCTCTGCCTCACCTGCACCT
AGATCGACTCCGACTGCAAAGCGACAACTCCCAAGCGAGGATACAAGGAC
TCTGAGAAAGCGCCCACGTCCAAATTCGTCTCAAGCCACGCACAGACGTT
CGCTTCGACTACAGGATAAACACAAGCCAGACTCCACAATTTCCACGGCC
ATGATTCCATTTTCGCAAAGTTTCAACACAGCAACCCAACGGTGTTCCCC
TGATTCGGTTGAAATACCTAGGTCTGTGGCCACCAAGCCTCCGCGAGCTA
TTACGCCATCAGATAGTGACGACAACGTTACCGTCGTTCAATCCAAGAGC
ATTAAGCGTGAGAAACGAAGAATATTCGTTCCGTATGAACGCACTTCGCT
TGACTATCAGCAGACCCTATCTCAATTGCGGAACGGAAATACACGGTACA
TCAAGCTTTCTTTCTCAGGAATCTCCGATGGTGACCTGCGGAATTTGTTC
GATGTTGGGATAAACATGCCTGATTTACCATCTGGCGGCCGTCACATCGA
ACTCAACAATAACCGCCTGTGTCGTATTACTTCTCATATGTTCCAACGTT
TCAGGGACATGAAGGTTATATCACTCATTCTATCATCTAACCTACTAACA
CAAATCGACCAGTCCTTAGTGTTTTGCACTGAACTTAAAACCCTGGACCT
CAGTCGCAATAACTTGAGGAGCCTCCCAGAACAACTTGGTGATTTGTCAA
ATTTACTTTTCCTGAAAGTCTCTGATAACAAACTCACGAAGCTTCCATCA
TTGTATCTACTTAGAAAGTTGCAGATTTTGAACGTTGCCAGAAACAATCT
TGAGTCCTTTCCGGAGGATGTAACTGAGGCGGGGAACGCTTTGACTGCGC
TTGACATTTCTGGCAATCAAGGTTTTCAGTCCTTCCCCGCGTGTTGCAAG
AACTGGACCCGCCTGGAAGACTTGATCCTGACAGGTACCGAAATTTTCGT
TTATCTAACAAAGAAGGAGCGCAAGATGCGGCCAAAGGCGCTCATAGAGG
AGTTGGCGGGGAAATCATTGGAACAGTTAAAGAATAGAACTAGAAAGAGG
AAACCACCGTCCCGCTATAGAGAGTCGTCAGAAGCAACAACAACTGTGAG
AAAAGCAAAAAGCGTTGTGGAAGTATAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:27319..29346-

>Ggra4354.t1 ID=Ggra4354.t1|Name=Ggra4354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2028bp|location=Sequence derived from alignment at tig00000898_pilon:27319..29346- (Gracilaria gracilis GNS1m male)
ATGAGCTCCGCGCACTCGGTCCCCAAACCGTCGCCCGACGCCTCCGACAA
TCAAAAGCGCCCTCCATCCAACACGTACGCTGGCGGCGACTGGTTCGTTG
CTTCTCCCCCTTCACTTCAACCCAACCGCGCTCCACATCCGCCTCAACTG
CTATCGCGCGCCACGCAACCTCCACCTCCGTCCCCTCCCCCTTCTGCCCC
CCATGCTTCCGATTCCGCCCCAAATGGCCCTTCTGTCTTTCAGCCACGGC
ATCGTGGCCAGCGCTATCAACCCCCGCAGTATAGGAAACCCACCAATGCA
GGTCAACAGGAACCGTCTTTCTCACGCACTCGCCGCTTACCAGCCGCTCC
AATCTACATGAATAATGATGCTTTGCGGACCTTCCAAAGCAGGAGCGCCA
AAACTCTCAACTTCTCCGAAGTCCCTGCGCCATTGCGTTTCAAAAATTCC
GCTCCTCCTCCTCCTCCCGCACCCGCACGTCACAAGCTTGACGCTCATGT
GGTCAACCTCGACGATGATACTGCTCCAACTGCCGCCCTCACGCCTTATG
AGAAACCCCCTCAGCTCGAGAGAAACCCTATCTCTTCTCTACACAATCCT
TTTCAACGTCAAGATGACTTGCCTCGGGTCCCCAAGAAGGAGGTAGCCCC
CTCAAAGAACTCCTCCCCAGATGTGAAAACCTTTCTCAATCACACCAGAG
AGGCTGCCAATTCTAAAGCTCCTGTCCGGCTAAAGACCGTTCGGCCAAAC
CGCCCCTCAGAACAACCGAAACGTAGTGATATGGAGGCCATCTGTGTTGA
AGACGATCCACATCCTGTTGTGCCCCAAAAACCTCGACCCAATTTGCTCC
CCCCTCAGCGGCCGATTGTGCTCCCATCTCGCTCTGCCTCACCTGCACCT
AGATCGACTCCGACTGCAAAGCGACAACTCCCAAGCGAGGATACAAGGAC
TCTGAGAAAGCGCCCACGTCCAAATTCGTCTCAAGCCACGCACAGACGTT
CGCTTCGACTACAGGATAAACACAAGCCAGACTCCACAATTTCCACGGCC
ATGATTCCATTTTCGCAAAGTTTCAACACAGCAACCCAACGGTGTTCCCC
TGATTCGGTTGAAATACCTAGGTCTGTGGCCACCAAGCCTCCGCGAGCTA
TTACGCCATCAGATAGTGACGACAACGTTACCGTCGTTCAATCCAAGAGC
ATTAAGCGTGAGAAACGAAGAATATTCGTTCCGTATGAACGCACTTCGCT
TGACTATCAGCAGACCCTATCTCAATTGCGGAACGGAAATACACGGTACA
TCAAGCTTTCTTTCTCAGGAATCTCCGATGGTGACCTGCGGAATTTGTTC
GATGTTGGGATAAACATGCCTGATTTACCATCTGGCGGCCGTCACATCGA
ACTCAACAATAACCGCCTGTGTCGTATTACTTCTCATATGTTCCAACGTT
TCAGGGACATGAAGGTTATATCACTCATTCTATCATCTAACCTACTAACA
CAAATCGACCAGTCCTTAGTGTTTTGCACTGAACTTAAAACCCTGGACCT
CAGTCGCAATAACTTGAGGAGCCTCCCAGAACAACTTGGTGATTTGTCAA
ATTTACTTTTCCTGAAAGTCTCTGATAACAAACTCACGAAGCTTCCATCA
TTGTATCTACTTAGAAAGTTGCAGATTTTGAACGTTGCCAGAAACAATCT
TGAGTCCTTTCCGGAGGATGTAACTGAGGCGGGGAACGCTTTGACTGCGC
TTGACATTTCTGGCAATCAAGGTTTTCAGTCCTTCCCCGCGTGTTGCAAG
AACTGGACCCGCCTGGAAGACTTGATCCTGACAGGTACCGAAATTTTCGT
TTATCTAACAAAGAAGGAGCGCAAGATGCGGCCAAAGGCGCTCATAGAGG
AGTTGGCGGGGAAATCATTGGAACAGTTAAAGAATAGAACTAGAAAGAGG
AAACCACCGTCCCGCTATAGAGAGTCGTCAGAAGCAACAACAACTGTGAG
AAAAGCAAAAAGCGTTGTGGAAGTATAA
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