Ggra4520.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4520.t1
Unique Name	Ggra4520.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:818471..819538 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ07294
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	3.68e-07
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4520	Ggra4520	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 818471..819538 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4520.t1.start1	Ggra4520.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 818471..818473 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4520.t1.CDS1	Ggra4520.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 818471..819538 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4520.t1.exon1	Ggra4520.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 818471..819538 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4520.t1.stop1	Ggra4520.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 819536..819538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4520.t1	Ggra4520.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 818471..819538 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:818471..819538+
coding sequence from alignment at tig00000898_pilon:818471..819538+

mRNA sequence

>Ggra4520.t1 ID=Ggra4520.t1|Name=Ggra4520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MQTLTILCLLCVSTFTHAWSESLRDANTLSSRIQTRASYPDDITGKWSFA
YSQNSSLCPQNIEHLSWDRYQQGPFRVEHEEILHDGVRCNDTKLGYYGRL
RFYHGTTLSAIFNNLTKKEVDPGQFVVNYTGKYYITDRMLYILNSTGPNI
DARWVADTRREPYLVGYESAHRVCNGKVLFPRGSTAFIIKPSEEDITIPR
IDFTFEADTKWLIMVPLYKGISCVYRFGDGDVEHDSTQFEGSSENELEAS
RRGKECFPASASVRMRDGGRRKMRDIAVGDEIYVGNGLFSPVFMFTHRLP
YVLSRFVRFQLDSGDNLAVSPNHYVYADGQLVTAQSVKLGQEMVLGNGSL
LSFSP*

spliced messenger RNA

>Ggra4520.t1 ID=Ggra4520.t1|Name=Ggra4520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000898_pilon:818471..819538+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACCCTGACAATTCTTTGTCTGCTGTGCGTTTCTACATTCACTCA
CGCATGGTCGGAAAGTTTGCGTGATGCGAATACGCTCTCATCTCGTATTC
AAACACGAGCCTCTTATCCTGATGACATCACCGGAAAGTGGAGTTTCGCA
TATAGTCAGAACTCGTCCCTATGTCCCCAGAATATAGAGCATCTAAGCTG
GGACCGCTACCAGCAAGGCCCCTTCCGCGTCGAGCATGAGGAAATTCTGC
ATGATGGCGTCCGTTGCAATGACACTAAACTTGGTTACTACGGCCGACTC
CGCTTCTACCACGGCACAACCCTGAGCGCTATCTTCAATAACCTCACCAA
GAAGGAAGTCGACCCAGGCCAATTCGTGGTCAACTACACTGGCAAGTATT
ACATCACCGACAGAATGCTATACATTCTTAACAGCACGGGTCCAAACATC
GATGCAAGGTGGGTGGCGGACACACGACGAGAACCATATTTGGTCGGATA
TGAATCAGCTCACAGGGTTTGTAATGGAAAAGTTCTTTTCCCACGAGGAT
CAACTGCCTTCATCATCAAACCATCTGAGGAGGACATCACCATACCGAGA
ATAGACTTTACGTTCGAGGCTGACACGAAGTGGCTTATCATGGTCCCGCT
GTATAAAGGGATTTCCTGTGTGTACAGGTTTGGGGATGGCGATGTGGAGC
ATGACTCGACTCAGTTTGAAGGTTCTTCAGAAAATGAGCTGGAAGCCTCT
AGGAGAGGGAAAGAGTGTTTTCCAGCTAGCGCATCAGTTCGCATGCGTGA
CGGCGGAAGGCGTAAGATGCGAGACATCGCTGTTGGGGACGAGATCTACG
TCGGAAATGGCTTGTTCTCGCCTGTCTTCATGTTCACTCACCGGCTGCCA
TATGTGCTATCGCGTTTTGTACGCTTTCAGCTTGATTCAGGGGATAATCT
GGCGGTTAGTCCGAATCATTATGTTTACGCTGACGGTCAACTGGTGACTG
CCCAATCTGTTAAACTGGGACAAGAAATGGTTCTTGGAAATGGTTCACTA
CTGTCATTCAGTCCATAG

protein sequence of Ggra4520.t1

>Ggra4520.t1 ID=Ggra4520.t1|Name=Ggra4520.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MQTLTILCLLCVSTFTHAWSESLRDANTLSSRIQTRASYPDDITGKWSFA
YSQNSSLCPQNIEHLSWDRYQQGPFRVEHEEILHDGVRCNDTKLGYYGRL
RFYHGTTLSAIFNNLTKKEVDPGQFVVNYTGKYYITDRMLYILNSTGPNI
DARWVADTRREPYLVGYESAHRVCNGKVLFPRGSTAFIIKPSEEDITIPR
IDFTFEADTKWLIMVPLYKGISCVYRFGDGDVEHDSTQFEGSSENELEAS
RRGKECFPASASVRMRDGGRRKMRDIAVGDEIYVGNGLFSPVFMFTHRLP
YVLSRFVRFQLDSGDNLAVSPNHYVYADGQLVTAQSVKLGQEMVLGNGSL
LSFSP*

mRNA from alignment at tig00000898_pilon:818471..819538+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4520.t1 ID=Ggra4520.t1|Name=Ggra4520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000898_pilon:818471..819538+ (Gracilaria gracilis GNS1m male)
ATGCAAACCCTGACAATTCTTTGTCTGCTGTGCGTTTCTACATTCACTCA
CGCATGGTCGGAAAGTTTGCGTGATGCGAATACGCTCTCATCTCGTATTC
AAACACGAGCCTCTTATCCTGATGACATCACCGGAAAGTGGAGTTTCGCA
TATAGTCAGAACTCGTCCCTATGTCCCCAGAATATAGAGCATCTAAGCTG
GGACCGCTACCAGCAAGGCCCCTTCCGCGTCGAGCATGAGGAAATTCTGC
ATGATGGCGTCCGTTGCAATGACACTAAACTTGGTTACTACGGCCGACTC
CGCTTCTACCACGGCACAACCCTGAGCGCTATCTTCAATAACCTCACCAA
GAAGGAAGTCGACCCAGGCCAATTCGTGGTCAACTACACTGGCAAGTATT
ACATCACCGACAGAATGCTATACATTCTTAACAGCACGGGTCCAAACATC
GATGCAAGGTGGGTGGCGGACACACGACGAGAACCATATTTGGTCGGATA
TGAATCAGCTCACAGGGTTTGTAATGGAAAAGTTCTTTTCCCACGAGGAT
CAACTGCCTTCATCATCAAACCATCTGAGGAGGACATCACCATACCGAGA
ATAGACTTTACGTTCGAGGCTGACACGAAGTGGCTTATCATGGTCCCGCT
GTATAAAGGGATTTCCTGTGTGTACAGGTTTGGGGATGGCGATGTGGAGC
ATGACTCGACTCAGTTTGAAGGTTCTTCAGAAAATGAGCTGGAAGCCTCT
AGGAGAGGGAAAGAGTGTTTTCCAGCTAGCGCATCAGTTCGCATGCGTGA
CGGCGGAAGGCGTAAGATGCGAGACATCGCTGTTGGGGACGAGATCTACG
TCGGAAATGGCTTGTTCTCGCCTGTCTTCATGTTCACTCACCGGCTGCCA
TATGTGCTATCGCGTTTTGTACGCTTTCAGCTTGATTCAGGGGATAATCT
GGCGGTTAGTCCGAATCATTATGTTTACGCTGACGGTCAACTGGTGACTG
CCCAATCTGTTAAACTGGGACAAGAAATGGTTCTTGGAAATGGTTCACTA
CTGTCATTCAGTCCATAG

Coding sequence (CDS) from alignment at tig00000898_pilon:818471..819538+

>Ggra4520.t1 ID=Ggra4520.t1|Name=Ggra4520.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000898_pilon:818471..819538+ (Gracilaria gracilis GNS1m male)
ATGCAAACCCTGACAATTCTTTGTCTGCTGTGCGTTTCTACATTCACTCA
CGCATGGTCGGAAAGTTTGCGTGATGCGAATACGCTCTCATCTCGTATTC
AAACACGAGCCTCTTATCCTGATGACATCACCGGAAAGTGGAGTTTCGCA
TATAGTCAGAACTCGTCCCTATGTCCCCAGAATATAGAGCATCTAAGCTG
GGACCGCTACCAGCAAGGCCCCTTCCGCGTCGAGCATGAGGAAATTCTGC
ATGATGGCGTCCGTTGCAATGACACTAAACTTGGTTACTACGGCCGACTC
CGCTTCTACCACGGCACAACCCTGAGCGCTATCTTCAATAACCTCACCAA
GAAGGAAGTCGACCCAGGCCAATTCGTGGTCAACTACACTGGCAAGTATT
ACATCACCGACAGAATGCTATACATTCTTAACAGCACGGGTCCAAACATC
GATGCAAGGTGGGTGGCGGACACACGACGAGAACCATATTTGGTCGGATA
TGAATCAGCTCACAGGGTTTGTAATGGAAAAGTTCTTTTCCCACGAGGAT
CAACTGCCTTCATCATCAAACCATCTGAGGAGGACATCACCATACCGAGA
ATAGACTTTACGTTCGAGGCTGACACGAAGTGGCTTATCATGGTCCCGCT
GTATAAAGGGATTTCCTGTGTGTACAGGTTTGGGGATGGCGATGTGGAGC
ATGACTCGACTCAGTTTGAAGGTTCTTCAGAAAATGAGCTGGAAGCCTCT
AGGAGAGGGAAAGAGTGTTTTCCAGCTAGCGCATCAGTTCGCATGCGTGA
CGGCGGAAGGCGTAAGATGCGAGACATCGCTGTTGGGGACGAGATCTACG
TCGGAAATGGCTTGTTCTCGCCTGTCTTCATGTTCACTCACCGGCTGCCA
TATGTGCTATCGCGTTTTGTACGCTTTCAGCTTGATTCAGGGGATAATCT
GGCGGTTAGTCCGAATCATTATGTTTACGCTGACGGTCAACTGGTGACTG
CCCAATCTGTTAAACTGGGACAAGAAATGGTTCTTGGAAATGGTTCACTA
CTGTCATTCAGTCCATAG