Ggra5736.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5736.t1
Unique NameGgra5736.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:412128..413724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5736Ggra5736Gracilaria gracilis GNS1m malegenetig00000897_pilon 412128..413724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1Ggra5736.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 412128..413724 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1.start1Ggra5736.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 412128..412130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1.CDS1Ggra5736.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 412128..413183 +
Ggra5736.t1.CDS2Ggra5736.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000897_pilon 413332..413724 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1.exon1Ggra5736.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 412128..413183 +
Ggra5736.t1.exon2Ggra5736.t1.exon2Gracilaria gracilis GNS1m maleexontig00000897_pilon 413332..413724 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1.intron1Ggra5736.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000897_pilon 413184..413331 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5736.t1.stop1Ggra5736.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 413722..413724 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5736.t1 ID=Ggra5736.t1|Name=Ggra5736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MRYFIPPLYPSDLPYVRIEPELHYYRRLVVKICQYDSLPQQYLPASLHLV
CFDRPYNTIHWANRRRWGVDAATEARIRTRSSFNRVMHGFHNVEFFSPPN
KERTSWYVARPEWWNAYEVPMSLSVPTPPVLAYFGSYITRNHDRYYLIWS
IALAEWAVLVAILALQAASDGIDWDCRSREAEIYRDGVQPPGRMFFIPPR
VIRDIRLFGLGTIVAGTDYYIEQLESLLTQVESFPWGAKQGWEVFDPVSW
KVVSRAKQRYPGAPTDQGPPGSPEPFPTVVESPAATPVVTSAPTPAPEGR
NTPALTGVTPLHPSTTRVDGPPRAILGGVMAAPAAPVPSQVDPQAISGLM
AQVELYQMAANQVAGLATAMVSTPTNPFEDPLFDASLNPGLLTTSQAPLH
IGSSVPPSLAQANAPPPMGPDVMPGVSVPTSTPVGHNSAPSQAPGQAHLF
QPWPGAHQNTTPGRGSSAGGSSGPHFATHPSG*
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spliced messenger RNA

>Ggra5736.t1 ID=Ggra5736.t1|Name=Ggra5736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000897_pilon:412128..413724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgaggtatttcattcccccgctttatcccagcgatctgccgtatgttcg
tattgaaccggagctccattattaccgacgtctggttgtgaagatctgtc
agtacgactcccttccgcagcagtaccttccggcttctttacatttggtt
tgcttcgataggccttacaataccatccattgggctaaccgtcgtaggtg
gggggtggatgctgccaccgaggctcgcattcgcacccggtccagcttca
accgcgtcatgcatgggttccataatgtggagttcttctcaccacctaat
aaggaaagaacctcttggtatgtggcccgacctgaatggtggaatgccta
tgaggttccgatgtcgcttagcgtcccaaccccaccggtattggcttact
tcgggagctacatcacccgtaaccacgatcggtattacctcatttggtcg
attgccctcgcggaatgggccgtattggtggccattttggctctccaggc
tgccagtgacggtattgactgggattgtcgttctcgagaagccgagattt
accgtgacggtgtgcaacctcctggtcgtatgtttttcattcccccgagg
gtcattcgcgacattcgcctatttggactcggaaccattgtggcaggtac
ggactactacattgagcagctggagtcgttgcttacccaagtggagagtt
tcccgtggggagccaagcaggggtgggaagttttcgatccggtgtcctgg
aaggttgtatcccgcgcgaagcagcgctatcccggggctccgaccgatca
gggacctccagggagtcccgagccattcccaactgtggtggaatcgccag
cagctacccctgtggtcacttcagcgcctactcccgctccggagggacgc
aatacgcctgcccttactggtgtgactcctcttcatcctagtaccacaag
ggttgatgggcctccgcgggctatcctcgggggtgtcatggctgcgcctg
cggcgcctgtcccctctcaggtggacccccaggccatttcaggtttaatg
gctcaggtcgagctctaccagatggctgccaaccaagtggcgggcttggc
cacggccatggtttcgacgcctacaaaccctttcgaagatcccctatttg
atgctagcctgaaccccggccttttgaccacttcgcaggctcctctccac
atcgggtcgtcggtacctccgtcgcttgcgcaggcgaacgcgccacctcc
gatgggtcccgacgtaatgccaggcgtcagcgtgcctactagtacccccg
tgggtcataatagcgcgcctagccaggctccaggccaggctcatctcttc
cagccttggccgggagcccatcagaacaccactccgggtcggggatcctc
agctggaggctcctcggggcctcactttgccactcacccatcaggttga
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protein sequence of Ggra5736.t1

>Ggra5736.t1 ID=Ggra5736.t1|Name=Ggra5736.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MRYFIPPLYPSDLPYVRIEPELHYYRRLVVKICQYDSLPQQYLPASLHLV
CFDRPYNTIHWANRRRWGVDAATEARIRTRSSFNRVMHGFHNVEFFSPPN
KERTSWYVARPEWWNAYEVPMSLSVPTPPVLAYFGSYITRNHDRYYLIWS
IALAEWAVLVAILALQAASDGIDWDCRSREAEIYRDGVQPPGRMFFIPPR
VIRDIRLFGLGTIVAGTDYYIEQLESLLTQVESFPWGAKQGWEVFDPVSW
KVVSRAKQRYPGAPTDQGPPGSPEPFPTVVESPAATPVVTSAPTPAPEGR
NTPALTGVTPLHPSTTRVDGPPRAILGGVMAAPAAPVPSQVDPQAISGLM
AQVELYQMAANQVAGLATAMVSTPTNPFEDPLFDASLNPGLLTTSQAPLH
IGSSVPPSLAQANAPPPMGPDVMPGVSVPTSTPVGHNSAPSQAPGQAHLF
QPWPGAHQNTTPGRGSSAGGSSGPHFATHPSG*
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mRNA from alignment at tig00000897_pilon:412128..413724+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5736.t1 ID=Ggra5736.t1|Name=Ggra5736.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1597bp|location=Sequence derived from alignment at tig00000897_pilon:412128..413724+ (Gracilaria gracilis GNS1m male)
atgaggtatttcattcccccgctttatcccagcgatctgccgtatgttcg
tattgaaccggagctccattattaccgacgtctggttgtgaagatctgtc
agtacgactcccttccgcagcagtaccttccggcttctttacatttggtt
tgcttcgataggccttacaataccatccattgggctaaccgtcgtaggtg
gggggtggatgctgccaccgaggctcgcattcgcacccggtccagcttca
accgcgtcatgcatgggttccataatgtggagttcttctcaccacctaat
aaggaaagaacctcttggtatgtggcccgacctgaatggtggaatgccta
tgaggttccgatgtcgcttagcgtcccaaccccaccggtattggcttact
tcgggagctacatcacccgtaaccacgatcggtattacctcatttggtcg
attgccctcgcggaatgggccgtattggtggccattttggctctccaggc
tgccagtgacggtattgactgggattgtcgttctcgagaagccgagattt
accgtgacggtgtgcaacctcctggtcgtatgtttttcattcccccgagg
gtcattcgcgacattcgcctatttggactcggaaccattgtggcaggtac
ggactactacattgagcagctggagtcgttgcttacccaagtggagagtt
tcccgtggggagccaagcaggggtgggaagttttcgatccggtgtcctgg
aaggttgtatcccgcgcgaagcagcgctatcccggggctccgaccgatca
gggacctccagggagtcccgagccattcccaactgtggtggaatcgccag
cagctacccctgtggtcacttcagcgcctactcccgctccggagggacgc
aatacgcctgcccttactggtgtgactcctcttcatcctagtaccacaag
ggttgatgggcctccgcgggctatcctcgggggtgtcatggctgcgcctg
cggcgcctgtcccctctcaggtggacccccaggccatttcaggtttaatg
gctcaggtccgccaagcctttgtggtgaaacttccggcgggcaagtccaa
cctctgtggtcgaagctcttacccttctggaaagcatcctgcctcttcat
gcacagtacatgcgatcctttttccaaattggtgagttccggaaccggtt
ccaggtcgagctctaccagatggctgccaaccaagtggcgggcttggcca
cggccatggtttcgacgcctacaaaccctttcgaagatcccctatttgat
gctagcctgaaccccggccttttgaccacttcgcaggctcctctccacat
cgggtcgtcggtacctccgtcgcttgcgcaggcgaacgcgccacctccga
tgggtcccgacgtaatgccaggcgtcagcgtgcctactagtacccccgtg
ggtcataatagcgcgcctagccaggctccaggccaggctcatctcttcca
gccttggccgggagcccatcagaacaccactccgggtcggggatcctcag
ctggaggctcctcggggcctcactttgccactcacccatcaggttga
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Coding sequence (CDS) from alignment at tig00000897_pilon:412128..413724+

>Ggra5736.t1 ID=Ggra5736.t1|Name=Ggra5736.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000897_pilon:412128..413724+ (Gracilaria gracilis GNS1m male)
atgaggtatttcattcccccgctttatcccagcgatctgccgtatgttcg
tattgaaccggagctccattattaccgacgtctggttgtgaagatctgtc
agtacgactcccttccgcagcagtaccttccggcttctttacatttggtt
tgcttcgataggccttacaataccatccattgggctaaccgtcgtaggtg
gggggtggatgctgccaccgaggctcgcattcgcacccggtccagcttca
accgcgtcatgcatgggttccataatgtggagttcttctcaccacctaat
aaggaaagaacctcttggtatgtggcccgacctgaatggtggaatgccta
tgaggttccgatgtcgcttagcgtcccaaccccaccggtattggcttact
tcgggagctacatcacccgtaaccacgatcggtattacctcatttggtcg
attgccctcgcggaatgggccgtattggtggccattttggctctccaggc
tgccagtgacggtattgactgggattgtcgttctcgagaagccgagattt
accgtgacggtgtgcaacctcctggtcgtatgtttttcattcccccgagg
gtcattcgcgacattcgcctatttggactcggaaccattgtggcaggtac
ggactactacattgagcagctggagtcgttgcttacccaagtggagagtt
tcccgtggggagccaagcaggggtgggaagttttcgatccggtgtcctgg
aaggttgtatcccgcgcgaagcagcgctatcccggggctccgaccgatca
gggacctccagggagtcccgagccattcccaactgtggtggaatcgccag
cagctacccctgtggtcacttcagcgcctactcccgctccggagggacgc
aatacgcctgcccttactggtgtgactcctcttcatcctagtaccacaag
ggttgatgggcctccgcgggctatcctcgggggtgtcatggctgcgcctg
cggcgcctgtcccctctcaggtggacccccaggccatttcaggtttaatg
gctcaggtcgagctctaccagatggctgccaaccaagtggcgggcttggc
cacggccatggtttcgacgcctacaaaccctttcgaagatcccctatttg
atgctagcctgaaccccggccttttgaccacttcgcaggctcctctccac
atcgggtcgtcggtacctccgtcgcttgcgcaggcgaacgcgccacctcc
gatgggtcccgacgtaatgccaggcgtcagcgtgcctactagtacccccg
tgggtcataatagcgcgcctagccaggctccaggccaggctcatctcttc
cagccttggccgggagcccatcagaacaccactccgggtcggggatcctc
agctggaggctcctcggggcctcactttgccactcacccatcaggttga
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