Ggra11022.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11022.t1
Unique NameGgra11022.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:21212..22627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07236
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue6.05e-20
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11022Ggra11022Gracilaria gracilis GNS1m malegenetig00000894_pilon 21212..22627 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11022.t1.start1Ggra11022.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 21212..21214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11022.t1.CDS1Ggra11022.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 21212..22627 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11022.t1.exon1Ggra11022.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 21212..22627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11022.t1.stop1Ggra11022.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 22625..22627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11022.t1Ggra11022.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 21212..22627 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11022.t1 ID=Ggra11022.t1|Name=Ggra11022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MRSVLFACALLPLVLASPFLDARAHRAVGATVRAEEEQPRAADVDGATFV
LVARSKGCVNEIEHGIVAFPPFEAGVSLALNLSPPEALIPFDNITVAGDT
CTRDALHDVLALYDPSKIALTDVGVDADDIPHIYLAGVDAAARICAPFQY
EPRVYLYTSQLQHLFRANQRFGGVQIEVSERTLEPEHNAMYMLSIPRNQT
ENACLYRRRTVSGEGPAMTPSKDEEPESSAEADESDDDEDEEQSASETDD
PEEEPQLAPQPVGPSTFSAAKEEAVLEEEKEAQLARGSGNKCFPASATVQ
LDDGQRIPMSQLQIGHRVLVAPGVFSPVFMFTHKLNNIVSDFVHIRTHRG
DRLSVTASHFIYLDSKLIPAGNAAIGQQVQLEDGALSTVSQVSVVQHSGL
YNPQTLHGDIIVDNIRASTYTDAVQPVVAHSFLAPLRFLFDKFAVYTSHF
DNGGDTLISIFRAPLFYLSSA*
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spliced messenger RNA

>Ggra11022.t1 ID=Ggra11022.t1|Name=Ggra11022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000894_pilon:21212..22627+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCGTGCTGTTTGCCTGCGCGCTTCTGCCGCTTGTGCTGGCGTC
GCCGTTTCTGGATGCGCGCGCACACCGCGCTGTTGGCGCTACCGTTCGGG
CGGAGGAAGAGCAGCCTCGTGCTGCTGATGTTGACGGCGCTACCTTCGTG
CTGGTCGCGCGCTCGAAAGGCTGCGTGAATGAAATTGAGCATGGCATCGT
CGCATTCCCGCCGTTCGAGGCTGGAGTTTCGCTCGCGCTCAACCTTTCGC
CGCCCGAGGCGCTCATTCCGTTTgataacatcacagttgctggagacact
tgcacccgagacgctctgcacgatgtgctggccttgtaCGATCCGTCCAA
GATTGCCCTCACTGACGTCGGTGTCGACGCTGATGACATCCCGCACATCT
ACcttgctggagtcgatgctgccgctaggatctgtgccccatttcagtac
gagccccgagtatacctctacacctcccagctgcagcacctgtttagagc
aaaccagcgtttcggtggagttcagattGAAGTGTCTGAACGAACGCTCG
AGCCCGAACACAACGCCATGTACATGCTCTCAATTCCCCGCAACCAAACT
GAGAACGCTTGCTTGTACCGCCGCCGAACCGTCAGTGGCGAGGGTCCAGC
AATGACCCCGAGCAAGGACGAAGAACCAGAGTCCTCCGCCGAAGCAGACG
AAAGCGATGACGATGAAGATGAAGAACAGTCCGCGTCAGAAACTGATGAC
CCTGAGGAGGAACCGCAGCTTGCTCCTCAGCCAGTTGGCCCGAGCACCTT
CTCCGCCGCCAAGGAAGAGGCTGTTTTGGAAGAGGAGAAAGAGGCTCAGC
TTGCAAGAGGGAGCGGCAACAAGTGCTTCCCAGCTTCGGCTACTGTACAA
CTGGACGACGGCCAACGCATCCCAATGTCTCAGCTCCAAATCGGTCATCG
CGTGCTTGTTGCTCCTGGTGTCTTCTCCCCCGTTTTTATGTTCACCCACA
AGCTCAACAATATCGTCAGCGACTTCGTGCACATTCGCACTCACCGCGGT
GATCGACTGTCTGTCACTGCCTCGCATTTTATCTACCTCGACTCCAAGCT
CATACCTGCCGGCAATGCCGCAATCGGACAACAAGTTCAGCTTGAAGATG
GAGCCTTGTCTACTGTATCTCAGGTTTCCGTCGTTCAGCACTCAGGGTTG
TACAACCCACAAACCCTTCACGGGGATATAATTGTGGACAACATTCGCGC
TTCCACCTATACCGATGCCGTCCAACCTGTTGTTGCACATTCTTTCCTGG
CTCCTCTCCGTTTTCTGTTTGATAAGTTTGCGGTTTACACCTCACATTTC
GACAACGGCGGTGACACCCTCATCAGCATTTTTCGAGCACCGTTGTTCTA
CCTTTCCAGCGCATAG
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protein sequence of Ggra11022.t1

>Ggra11022.t1 ID=Ggra11022.t1|Name=Ggra11022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MRSVLFACALLPLVLASPFLDARAHRAVGATVRAEEEQPRAADVDGATFV
LVARSKGCVNEIEHGIVAFPPFEAGVSLALNLSPPEALIPFDNITVAGDT
CTRDALHDVLALYDPSKIALTDVGVDADDIPHIYLAGVDAAARICAPFQY
EPRVYLYTSQLQHLFRANQRFGGVQIEVSERTLEPEHNAMYMLSIPRNQT
ENACLYRRRTVSGEGPAMTPSKDEEPESSAEADESDDDEDEEQSASETDD
PEEEPQLAPQPVGPSTFSAAKEEAVLEEEKEAQLARGSGNKCFPASATVQ
LDDGQRIPMSQLQIGHRVLVAPGVFSPVFMFTHKLNNIVSDFVHIRTHRG
DRLSVTASHFIYLDSKLIPAGNAAIGQQVQLEDGALSTVSQVSVVQHSGL
YNPQTLHGDIIVDNIRASTYTDAVQPVVAHSFLAPLRFLFDKFAVYTSHF
DNGGDTLISIFRAPLFYLSSA*
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mRNA from alignment at tig00000894_pilon:21212..22627+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11022.t1 ID=Ggra11022.t1|Name=Ggra11022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000894_pilon:21212..22627+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCGTGCTGTTTGCCTGCGCGCTTCTGCCGCTTGTGCTGGCGTC
GCCGTTTCTGGATGCGCGCGCACACCGCGCTGTTGGCGCTACCGTTCGGG
CGGAGGAAGAGCAGCCTCGTGCTGCTGATGTTGACGGCGCTACCTTCGTG
CTGGTCGCGCGCTCGAAAGGCTGCGTGAATGAAATTGAGCATGGCATCGT
CGCATTCCCGCCGTTCGAGGCTGGAGTTTCGCTCGCGCTCAACCTTTCGC
CGCCCGAGGCGCTCATTCCGTTTgataacatcacagttgctggagacact
tgcacccgagacgctctgcacgatgtgctggccttgtaCGATCCGTCCAA
GATTGCCCTCACTGACGTCGGTGTCGACGCTGATGACATCCCGCACATCT
ACcttgctggagtcgatgctgccgctaggatctgtgccccatttcagtac
gagccccgagtatacctctacacctcccagctgcagcacctgtttagagc
aaaccagcgtttcggtggagttcagattGAAGTGTCTGAACGAACGCTCG
AGCCCGAACACAACGCCATGTACATGCTCTCAATTCCCCGCAACCAAACT
GAGAACGCTTGCTTGTACCGCCGCCGAACCGTCAGTGGCGAGGGTCCAGC
AATGACCCCGAGCAAGGACGAAGAACCAGAGTCCTCCGCCGAAGCAGACG
AAAGCGATGACGATGAAGATGAAGAACAGTCCGCGTCAGAAACTGATGAC
CCTGAGGAGGAACCGCAGCTTGCTCCTCAGCCAGTTGGCCCGAGCACCTT
CTCCGCCGCCAAGGAAGAGGCTGTTTTGGAAGAGGAGAAAGAGGCTCAGC
TTGCAAGAGGGAGCGGCAACAAGTGCTTCCCAGCTTCGGCTACTGTACAA
CTGGACGACGGCCAACGCATCCCAATGTCTCAGCTCCAAATCGGTCATCG
CGTGCTTGTTGCTCCTGGTGTCTTCTCCCCCGTTTTTATGTTCACCCACA
AGCTCAACAATATCGTCAGCGACTTCGTGCACATTCGCACTCACCGCGGT
GATCGACTGTCTGTCACTGCCTCGCATTTTATCTACCTCGACTCCAAGCT
CATACCTGCCGGCAATGCCGCAATCGGACAACAAGTTCAGCTTGAAGATG
GAGCCTTGTCTACTGTATCTCAGGTTTCCGTCGTTCAGCACTCAGGGTTG
TACAACCCACAAACCCTTCACGGGGATATAATTGTGGACAACATTCGCGC
TTCCACCTATACCGATGCCGTCCAACCTGTTGTTGCACATTCTTTCCTGG
CTCCTCTCCGTTTTCTGTTTGATAAGTTTGCGGTTTACACCTCACATTTC
GACAACGGCGGTGACACCCTCATCAGCATTTTTCGAGCACCGTTGTTCTA
CCTTTCCAGCGCATAG
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Coding sequence (CDS) from alignment at tig00000894_pilon:21212..22627+

>Ggra11022.t1 ID=Ggra11022.t1|Name=Ggra11022.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000894_pilon:21212..22627+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCGTGCTGTTTGCCTGCGCGCTTCTGCCGCTTGTGCTGGCGTC
GCCGTTTCTGGATGCGCGCGCACACCGCGCTGTTGGCGCTACCGTTCGGG
CGGAGGAAGAGCAGCCTCGTGCTGCTGATGTTGACGGCGCTACCTTCGTG
CTGGTCGCGCGCTCGAAAGGCTGCGTGAATGAAATTGAGCATGGCATCGT
CGCATTCCCGCCGTTCGAGGCTGGAGTTTCGCTCGCGCTCAACCTTTCGC
CGCCCGAGGCGCTCATTCCGTTTgataacatcacagttgctggagacact
tgcacccgagacgctctgcacgatgtgctggccttgtaCGATCCGTCCAA
GATTGCCCTCACTGACGTCGGTGTCGACGCTGATGACATCCCGCACATCT
ACcttgctggagtcgatgctgccgctaggatctgtgccccatttcagtac
gagccccgagtatacctctacacctcccagctgcagcacctgtttagagc
aaaccagcgtttcggtggagttcagattGAAGTGTCTGAACGAACGCTCG
AGCCCGAACACAACGCCATGTACATGCTCTCAATTCCCCGCAACCAAACT
GAGAACGCTTGCTTGTACCGCCGCCGAACCGTCAGTGGCGAGGGTCCAGC
AATGACCCCGAGCAAGGACGAAGAACCAGAGTCCTCCGCCGAAGCAGACG
AAAGCGATGACGATGAAGATGAAGAACAGTCCGCGTCAGAAACTGATGAC
CCTGAGGAGGAACCGCAGCTTGCTCCTCAGCCAGTTGGCCCGAGCACCTT
CTCCGCCGCCAAGGAAGAGGCTGTTTTGGAAGAGGAGAAAGAGGCTCAGC
TTGCAAGAGGGAGCGGCAACAAGTGCTTCCCAGCTTCGGCTACTGTACAA
CTGGACGACGGCCAACGCATCCCAATGTCTCAGCTCCAAATCGGTCATCG
CGTGCTTGTTGCTCCTGGTGTCTTCTCCCCCGTTTTTATGTTCACCCACA
AGCTCAACAATATCGTCAGCGACTTCGTGCACATTCGCACTCACCGCGGT
GATCGACTGTCTGTCACTGCCTCGCATTTTATCTACCTCGACTCCAAGCT
CATACCTGCCGGCAATGCCGCAATCGGACAACAAGTTCAGCTTGAAGATG
GAGCCTTGTCTACTGTATCTCAGGTTTCCGTCGTTCAGCACTCAGGGTTG
TACAACCCACAAACCCTTCACGGGGATATAATTGTGGACAACATTCGCGC
TTCCACCTATACCGATGCCGTCCAACCTGTTGTTGCACATTCTTTCCTGG
CTCCTCTCCGTTTTCTGTTTGATAAGTTTGCGGTTTACACCTCACATTTC
GACAACGGCGGTGACACCCTCATCAGCATTTTTCGAGCACCGTTGTTCTA
CCTTTCCAGCGCATAG
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