Ggra10716.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10716.t1
Unique NameGgra10716.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:675293..676980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10716Ggra10716Gracilaria gracilis GNS1m malegenetig00000888_pilon 675293..676980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1Ggra10716.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 675293..676980 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1.stop1Ggra10716.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 675293..675295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1.CDS1Ggra10716.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 675293..675771 -
Ggra10716.t1.CDS2Ggra10716.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 675883..676076 -
Ggra10716.t1.CDS3Ggra10716.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000888_pilon 676256..676394 -
Ggra10716.t1.CDS4Ggra10716.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000888_pilon 676461..676980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1.exon1Ggra10716.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 675293..675771 -
Ggra10716.t1.exon2Ggra10716.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 675883..676076 -
Ggra10716.t1.exon3Ggra10716.t1.exon3Gracilaria gracilis GNS1m maleexontig00000888_pilon 676256..676394 -
Ggra10716.t1.exon4Ggra10716.t1.exon4Gracilaria gracilis GNS1m maleexontig00000888_pilon 676461..676980 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1.intron1Ggra10716.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 675772..675882 -
Ggra10716.t1.intron2Ggra10716.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000888_pilon 676077..676255 -
Ggra10716.t1.intron3Ggra10716.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000888_pilon 676395..676460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1.start1Ggra10716.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 676978..676980 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MPPVAFHVDLEITIHLPALKVRECAGIASRERSRPLVCLLVFLVQKVQTL
HLVPHNASHARKDLLFTPRFLDKPVVKSAAVDMPMKKTSPSANVARPALL
RLLRPLQFLNASHAHPVRILMGITHATNAGLVHSVAQPRQDVRYVPQALY
LRKIPDLRSAFHVNQANTADCRLESVDVHMDPVHMVTLKRPPGTVKGVEL
MNDMTNNLNDAYLVLGERGVGEFSSESNSSECLPCPSGTVSTYYGAPNCE
SCPEGMVPDVYPVECIHRETGCRANEQLAAGSQGGCEPCPDSQVRDIDKV
CKCRGGLALNLGMINGTCSECPAGSYGESLIEGADADNVCVQCPAGTYRV
VATFGTMLGIRLDSKSPAPLSCEPCPAGFISRHDGATECEQCPPGKFSYG
IGDTECLEFGAPTAAVTPNDPLDLEVKRESERFPEWWPVSFSY*
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spliced messenger RNA

>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000888_pilon:675293..676980- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCAGTTGCATTCCATGTAGACCTGGAAATTACCATCCATTTACC
GGCGCTCAAAGTGAGAGAGTGTGCCGGAATTGCTTCTCGGGAACGTTCTC
GACCGCTGGTTTGTCTTCTTGTATTCCTTGTCCAAAAGGTACAAACTCTT
CATTTGGTGCCTCACAATGCGTCTCATGCCCGAAAGGATCTTCTGTTTAC
TCCCCGTTTCTTGGACAAGCCGGTTGTGAAGTCTGCCGCAGTGGATATGC
CGATGAAGAAAACCTCGCCGAGTGCAAACGTTGCCCGCCCGGCTCTGCTG
CGCCTCCTGCGTCCACTTCAATTTCTGAATGCATCACATGCCCATCCGGT
ACGTATTCTGATGGGTATAACTCATGCTACGAATGCAGGCCTGGTACATT
CAGTGGCCCAGCCTCGCCAAGATGTTCGTTATGTCCCTCAGGCTCTGTAT
CTGAGAAAGATTCCGGATCTACGAAGTGCGTTCCATGTGAACCAGGCCAA
TACGGCAGACTGTCGCTTGGAGTCTGTCGACGTGCACATGGACCCTGTCC
ACATGGTTACATTGAAACGTCCACCGGGGACTGTGAAAGGTGTGGAACTG
ATGAACGATATGACGAACAACTTGAACGATGCGTACCTTGTCCTCGGGGA
GAGGGGAGTAGGGGAGTTTAGTTCGGAGTCAAATTCAAGTGAGTGCCTTC
CATGTCCGAGTGGCACAGTTTCCACATACTATGGGGCCCCAAACTGTGAA
TCCTGCCCAGAAGGAATGGTGCCAGATGTTTATCCTGTCGAATGTATCCA
CCGCGAGACGGGCTGTCGTGCGAATGAGCAACTTGCCGCAGGGTCTCAAG
GCGGGTGCGAACCATGTCCCGACAGTCAAGTGCGGGATATCGACAAGGTT
TGCAAATGTCGAGGTGGACTTGCTTTGAACTTGGGGATGATAAACGGGAC
ATGTTCCGAATGCCCCGCCGGTAGCTACGGAGAATCTCTTATCGAAGGAG
CGGACGCGGACAATGTTTGTGTGCAGTGCCCCGCCGGGACATATCGCGTG
GTTGCAACTTTTGGAACAATGCTAGGTATTCGCTTGGATAGTAAGAGTCC
GGCGCCTCTATCATGTGAGCCGTGCCCCGCTGGTTTCATATCGCGACACG
ACGGTGCTACAGAATGTGAGCAGTGTCCTCCAGGAAAGTTCAGCTACGGC
ATTGGAGACACAGAGTGTTTGGAGTTTGGTGCTCCCACTGCGGCCGTAAC
TCCAAATGATCCATTGGACTTGGAGGTCAAGAGAGAATCTGAACGATTCC
CAGAGTGGTGGCCTGTCTCTTTCTCGTACTAG
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protein sequence of Ggra10716.t1

>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MPPVAFHVDLEITIHLPALKVRECAGIASRERSRPLVCLLVFLVQKVQTL
HLVPHNASHARKDLLFTPRFLDKPVVKSAAVDMPMKKTSPSANVARPALL
RLLRPLQFLNASHAHPVRILMGITHATNAGLVHSVAQPRQDVRYVPQALY
LRKIPDLRSAFHVNQANTADCRLESVDVHMDPVHMVTLKRPPGTVKGVEL
MNDMTNNLNDAYLVLGERGVGEFSSESNSSECLPCPSGTVSTYYGAPNCE
SCPEGMVPDVYPVECIHRETGCRANEQLAAGSQGGCEPCPDSQVRDIDKV
CKCRGGLALNLGMINGTCSECPAGSYGESLIEGADADNVCVQCPAGTYRV
VATFGTMLGIRLDSKSPAPLSCEPCPAGFISRHDGATECEQCPPGKFSYG
IGDTECLEFGAPTAAVTPNDPLDLEVKRESERFPEWWPVSFSY*
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mRNA from alignment at tig00000888_pilon:675293..676980-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1688bp|location=Sequence derived from alignment at tig00000888_pilon:675293..676980- (Gracilaria gracilis GNS1m male)
ATGCCACCAGTTGCATTCCATGTAGACCTGGAAATTACCATCCATTTACC
GGCGCTCAAAGTGAGAGAGTGTGCCGGAATTGCTTCTCGGGAACGTTCTC
GACCGCTGGTTTGTCTTCTTGTATTCCTTGTCCAAAAGGTACAAACTCTT
CATTTGGTGCCTCACAATGCGTCTCATGCCCGAAAGGATCTTCTGTTTAC
TCCCCGTTTCTTGGACAAGCCGGTTGTGAAGTCTGCCGCAGTGGATATGC
CGATGAAGAAAACCTCGCCGAGTGCAAACGTTGCCCGCCCGGCTCTGCTG
CGCCTCCTGCGTCCACTTCAATTTCTGAATGCATCACATGCCCATCCGGT
ACGTATTCTGATGGGTATAACTCATGCTACGAATGCAGGCCTGGTACATT
CAGTGGCCCAGCCTCGCCAAGATGTTCGTTATGTCCCTCAGGCTCTGTAT
CTGAGAAAGATTCCGGATCTACGAAGTGCGTTCCATGTGAACCAGGCCAA
TACGGCAGACTGTCGCTTGGGTACGATTTGATGCCCATGTGCTTTGATTG
CCCGCCGAATACAACCACATTTACGCCTGGGAGAAGAGTCTGTCGACGTG
CACATGGACCCTGTCCACATGGTTACATTGAAACGTCCACCGGGGACTGT
GAAAGGTGTGGAACTGATGAACGATATGACGAACAACTTGAACGATGCGT
ACCTTGTCCTCGGGGAGAGGGGAGTGTGGGTGGACTATCAAGACAATGCG
CACCCTGTGCCGAAGTTCTATTAGCCGGAGTTCACAACTCTCGTTGTAGT
CCGTGGTACTTCTATTCACGTCCAACAGTCGTTAACCAAACGTGTGCTCC
TGGAACATATATCCATGACACTGAATTTACGCGCTTCTGCATACCTTGCG
AAAGAGGGGAGTTTAGTTCGGAGTCAAATTCAAGTGAGTGCCTTCCATGT
CCGAGTGGCACAGTTTCCACATACTATGGGGCCCCAAACTGTGAATCCTG
CCCAGAAGGAATGGTGCCAGATGTTTATCCTGTCGAATGTATCCACCGCG
AGACGGGCTGTCGTGCGAATGAGCAACTTGCCGCAGGGTCTCAAGGCGGT
ACGCATTGTGTATCAAAAGACTGTTTGGTCCATGAGAACGGTTCATACTC
ATGTCCGGAGTGCCTCAATTCCAGCCCCGTATTTCTGCCCAATTCAATTC
ATTTCGAAGGGTGCGAACCATGTCCCGACAGTCAAGTGCGGGATATCGAC
AAGGTTTGCAAATGTCGAGGTGGACTTGCTTTGAACTTGGGGATGATAAA
CGGGACATGTTCCGAATGCCCCGCCGGTAGCTACGGAGAATCTCTTATCG
AAGGAGCGGACGCGGACAATGTTTGTGTGCAGTGCCCCGCCGGGACATAT
CGCGTGGTTGCAACTTTTGGAACAATGCTAGGTATTCGCTTGGATAGTAA
GAGTCCGGCGCCTCTATCATGTGAGCCGTGCCCCGCTGGTTTCATATCGC
GACACGACGGTGCTACAGAATGTGAGCAGTGTCCTCCAGGAAAGTTCAGC
TACGGCATTGGAGACACAGAGTGTTTGGAGTTTGGTGCTCCCACTGCGGC
CGTAACTCCAAATGATCCATTGGACTTGGAGGTCAAGAGAGAATCTGAAC
GATTCCCAGAGTGGTGGCCTGTCTCTTTCTCGTACTAG
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Coding sequence (CDS) from alignment at tig00000888_pilon:675293..676980-

>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000888_pilon:675293..676980- (Gracilaria gracilis GNS1m male)
ATGCCACCAGTTGCATTCCATGTAGACCTGGAAATTACCATCCATTTACC
GGCGCTCAAAGTGAGAGAGTGTGCCGGAATTGCTTCTCGGGAACGTTCTC
GACCGCTGGTTTGTCTTCTTGTATTCCTTGTCCAAAAGGTACAAACTCTT
CATTTGGTGCCTCACAATGCGTCTCATGCCCGAAAGGATCTTCTGTTTAC
TCCCCGTTTCTTGGACAAGCCGGTTGTGAAGTCTGCCGCAGTGGATATGC
CGATGAAGAAAACCTCGCCGAGTGCAAACGTTGCCCGCCCGGCTCTGCTG
CGCCTCCTGCGTCCACTTCAATTTCTGAATGCATCACATGCCCATCCGGT
ACGTATTCTGATGGGTATAACTCATGCTACGAATGCAGGCCTGGTACATT
CAGTGGCCCAGCCTCGCCAAGATGTTCGTTATGTCCCTCAGGCTCTGTAT
CTGAGAAAGATTCCGGATCTACGAAGTGCGTTCCATGTGAACCAGGCCAA
TACGGCAGACTGTCGCTTGGAGTCTGTCGACGTGCACATGGACCCTGTCC
ACATGGTTACATTGAAACGTCCACCGGGGACTGTGAAAGGTGTGGAACTG
ATGAACGATATGACGAACAACTTGAACGATGCGTACCTTGTCCTCGGGGA
GAGGGGAGTAGGGGAGTTTAGTTCGGAGTCAAATTCAAGTGAGTGCCTTC
CATGTCCGAGTGGCACAGTTTCCACATACTATGGGGCCCCAAACTGTGAA
TCCTGCCCAGAAGGAATGGTGCCAGATGTTTATCCTGTCGAATGTATCCA
CCGCGAGACGGGCTGTCGTGCGAATGAGCAACTTGCCGCAGGGTCTCAAG
GCGGGTGCGAACCATGTCCCGACAGTCAAGTGCGGGATATCGACAAGGTT
TGCAAATGTCGAGGTGGACTTGCTTTGAACTTGGGGATGATAAACGGGAC
ATGTTCCGAATGCCCCGCCGGTAGCTACGGAGAATCTCTTATCGAAGGAG
CGGACGCGGACAATGTTTGTGTGCAGTGCCCCGCCGGGACATATCGCGTG
GTTGCAACTTTTGGAACAATGCTAGGTATTCGCTTGGATAGTAAGAGTCC
GGCGCCTCTATCATGTGAGCCGTGCCCCGCTGGTTTCATATCGCGACACG
ACGGTGCTACAGAATGTGAGCAGTGTCCTCCAGGAAAGTTCAGCTACGGC
ATTGGAGACACAGAGTGTTTGGAGTTTGGTGCTCCCACTGCGGCCGTAAC
TCCAAATGATCCATTGGACTTGGAGGTCAAGAGAGAATCTGAACGATTCC
CAGAGTGGTGGCCTGTCTCTTTCTCGTACTAG
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