Ggra10716.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10716.t1
Unique NameGgra10716.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length444
Homology
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BLAST of Ggra10716.t1 vs. uniprot
Match: A0A2V3IT56 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT56_9FLOR)

HSP 1 Score: 103 bits (256), Expect = 7.440e-21
Identity = 78/152 (51.32%), Postives = 92/152 (60.53%), Query Frame = 0 
Query:  285 GCEPCPDSQVRDIDKVCKCRGGLALNLGMINGTCSECPAGSYGESLIEGADADNVXXXXXXXXYRVVATFGTMLGIRLDSKSPAPLSCEPCPAGFISRHDGATEXXXXXXXXXXXXXXXXXXLEFGAPTAAVTPNDPLDLEVKRESERFPEW 436
            GC+PCP  QVR++D  C C G  A NLG+I+G+CSECP GSYG+        +N+   XXX  YR V T   ++ +     S  P  C  CPAG I+R      XXXXXXXXXXXXXXXX  L FGAPTA V  ND LD+ V RE E   EW
Sbjct:  182 GCDPCPGKQVRNLDYTCSCSGPFAQNLGIIDGSCSECPVGSYGKRT--ATRKENICVQXXXGTYREVRTAEELMALCPRCGSAKP--CLKCPAGSITRRGXXXXXXXXXXXXXXXXXXXXECLRFGAPTAPVKFNDALDVNVVRERESLAEW 329
[Close]
BLAST of Ggra10716.t1 vs. uniprot
Match: A0A2V3IK62 (Ephrin_rec_like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK62_9FLOR)

HSP 1 Score: 75.9 bits (185), Expect = 1.830e-11
Identity = 96/263 (36.50%), Postives = 119/263 (45.25%), Query Frame = 0 
Query:  221 GEFSSESNSSECLPCPSGTVSTYYGAPNCESCPEGMVPDVYPVECIHRETGCRANEQLA------------------------------AGS------QGGCEPCPDSQVRD-------------------IDKVCKCRGGLALNLGMINGTCSECPAGSYGESLIEGADADNVXXXXXXXXYR------VVATFGTMLGIRLDSKSPAPLSCEPCPAGFISRHDGATEXXXXXXXXXXXXXXXXXXLEFGAPTAAVTPNDPL 422
            G  + E     C  CP G V    GA NC  C  G  P  +  +C+  +  C     +                                GS       G CE CP + + D                     + C CRG +ALN GMING+C  CPAGSYG      A  D+ XXXXXXXXYR       +A   + +G R ++ +P    C+ C AGF S  DGATEXXXXXXXXXXXXXXXXXXLEFGA +  V  ++P+
Sbjct:   45 GVANREDQEIGCRRCPPGFVQPEAGASNCIKCEPGTEPGEFEQKCVKPQNRCEIGFSIVRQYRRSYDCEMDTCDQAVELSHFKGRVCGMCGSGHFTKEDGQCERCPATSLGDGLRCAQCPNGTVRFGSRSRYGETCACRGPVALNRGMINGSCQLCPAGSYGAPK-GNAVPDHEXXXXXXXXYRNFVDENSIAAACSNVG-RCNALAP----CKACEAGFFSDEDGATEXXXXXXXXXXXXXXXXXXLEFGAASRPVPFDEPI 301
The following BLAST results are available for this feature:
BLAST of Ggra10716.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IT567.440e-2151.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IK621.830e-1136.50Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01411GCC2_GCC3_2coord: 359..406
e-value: 8.0E-4
score: 28.7
coord: 221..265
e-value: 0.0036
score: 26.5
coord: 316..358
e-value: 4.1
score: 11.5
NoneNo IPR availableGENE3D2.10.50.10Tumor Necrosis Factor Receptor, subunit A, domain 2coord: 333..409
e-value: 3.3E-8
score: 35.4
coord: 219..266
e-value: 3.1E-6
score: 29.0
NoneNo IPR availablePANTHERPTHR46967INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINALcoord: 317..408
coord: 220..329
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 228..402

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:675293..676980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10716.t1Ggra10716.t1Gracilaria gracilis GNS1m malemRNAtig00000888_pilon 675293..676980 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10716.t1 ID=Ggra10716.t1|Name=Ggra10716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MPPVAFHVDLEITIHLPALKVRECAGIASRERSRPLVCLLVFLVQKVQTL
HLVPHNASHARKDLLFTPRFLDKPVVKSAAVDMPMKKTSPSANVARPALL
RLLRPLQFLNASHAHPVRILMGITHATNAGLVHSVAQPRQDVRYVPQALY
LRKIPDLRSAFHVNQANTADCRLESVDVHMDPVHMVTLKRPPGTVKGVEL
MNDMTNNLNDAYLVLGERGVGEFSSESNSSECLPCPSGTVSTYYGAPNCE
SCPEGMVPDVYPVECIHRETGCRANEQLAAGSQGGCEPCPDSQVRDIDKV
CKCRGGLALNLGMINGTCSECPAGSYGESLIEGADADNVCVQCPAGTYRV
VATFGTMLGIRLDSKSPAPLSCEPCPAGFISRHDGATECEQCPPGKFSYG
IGDTECLEFGAPTAAVTPNDPLDLEVKRESERFPEWWPVSFSY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_cys_sf