Ggra9920.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9920.t1
Unique NameGgra9920.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Homology
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A2V3J367 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J367_9FLOR)

HSP 1 Score: 360 bits (925), Expect = 1.590e-123
Identity = 175/208 (84.13%), Postives = 188/208 (90.38%), Query Frame = 0
Query:    1 MSAYPLRHVARAAVSASRVAPKS--AGLSEISSATAITRYAVPNALVLSRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLCTY 206
            M+A  LR+ A+AA+ AS  A K+   GL+++SS +A+  YA   AL + R +HSSSARDSK+AHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMM AGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLCTY
Sbjct:   46 MTASSLRYAAQAAIRASAAASKNNAVGLAQLSSPSALANYAPQTALAIPRAIHSSSARDSKIAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMHAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLCTY 253          
BLAST of Ggra9920.t1 vs. uniprot
Match: S0F3N1 (Putative NADH2 dehydrogenase (Ubiquinone) chain PSST n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3N1_CHOCR)

HSP 1 Score: 340 bits (872), Expect = 7.680e-116
Identity = 162/180 (90.00%), Postives = 167/180 (92.78%), Query Frame = 0
Query:   34 AITRYAVPNALVLSRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLCTYKPSNARR 213
            A++   VP +LV  RTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL  Y  +   +
Sbjct:   37 ALSTTVVPTSLVHLRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLRAYATTKENQ 216          
BLAST of Ggra9920.t1 vs. uniprot
Match: NADH-quinone oxidoreductase subunit B 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCBAC (NADH-quinone oxidoreductase subunit B 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCBAC)

HSP 1 Score: 313 bits (803), Expect = 2.170e-105
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 0
Query:   46 LSRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            L+R  HSSSARDSKVAHLKGMQP+N AEYVVTKLDDL+NWARNNSLWPMTFGLACCAVEMM AGA+RYDLDRFG +FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP P WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL
Sbjct:   47 LTRFAHSSSARDSKVAHLKGMQPANNAEYVVTKLDDLLNWARNNSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPAPCWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 204          
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A1X6PJ12 (Oxidored_q6 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ12_PORUM)

HSP 1 Score: 294 bits (752), Expect = 1.780e-97
Identity = 152/209 (72.73%), Postives = 165/209 (78.95%), Query Frame = 0
Query:    3 AYPLRHVARAAVSASRVAPKSAGLSEISSATAITRYAVPNALVLSRTVH--------SSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            A PLR  ARAA  A   A  SAG+    +A+         ALV   T          +SSAR++ VA+L+G QP   +EYVVT+LDDLVNWARNNSLWPMTFGLACCAVEMM AGA+RYDLDRFG +FRPSPRQSD MIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALL
Sbjct:   10 AAPLRLAARAAAPA---AAPSAGILTRWAASXXXXXXXXGALVTGSTTAGPSYATTATSSARNAPVANLQGAQPIGNSEYVVTRLDDLVNWARNNSLWPMTFGLACCAVEMMHAGAARYDLDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALL 215          
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A7S0ZIP6 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIP6_9RHOD)

HSP 1 Score: 275 bits (702), Expect = 3.810e-90
Identity = 130/182 (71.43%), Postives = 148/182 (81.32%), Query Frame = 0
Query:   22 KSAGLSEISSATAITRYAVPNALVLSRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            ++ G SE++    + R  +P  +  S   +S++      + +  M P N  E+VV+KLDDL NWARNNSLWPMTFGLACCAVEMM AGA+RYDLDRFG +FRPSPRQSD MIVAGTLTNKMAPALRKVYDQMP P+WVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALL
Sbjct:   19 RAGGTSEVAL---LNRNELPLRVFCSDARNSAAVYAGSGSRVPSMAPQNNMEFVVSKLDDLTNWARNNSLWPMTFGLACCAVEMMHAGAARYDLDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPNPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALL 197          
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A0L0D595 (Oxidored_q6 domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D595_THETB)

HSP 1 Score: 274 bits (700), Expect = 1.150e-89
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 0
Query:   39 AVPNALVLSRTVHSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            A  +A V       + A  S  A + G  PSN+ EYVV KLDDLVNWAR  S+WPMTFGLACCAVEMMQ  A+RYD+DRFG +FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWV+SMGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAE L+
Sbjct:   45 AAESAPVAGAGTQGAVAGPSSSALVAGTPPSNKGEYVVAKLDDLVNWARKGSIWPMTFGLACCAVEMMQCAAARYDVDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEGLM 209          
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A0D2LR70 (Oxidored_q6 domain-containing protein n=20 Tax=Gossypium TaxID=3633 RepID=A0A0D2LR70_GOSRA)

HSP 1 Score: 271 bits (693), Expect = 6.990e-89
Identity = 129/170 (75.88%), Postives = 140/170 (82.35%), Query Frame = 0
Query:   43 ALVLSRTVHSSSARDSKVAHLKGMQPSNR---------AEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            AL +  TV S S+  +   + +   PS           AEYV++K+DDL+NWAR  S+WPMTFGLACCAVEMM AGASRYD DRFG +FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL
Sbjct:   21 ALAIHTTVPSLSSSATPTTYARPSPPSTSGTPSSLSKPAEYVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 190          
BLAST of Ggra9920.t1 vs. uniprot
Match: C5YUG3 (Oxidored_q6 domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C5YUG3_SORBI)

HSP 1 Score: 270 bits (690), Expect = 1.420e-88
Identity = 131/164 (79.88%), Postives = 139/164 (84.76%), Query Frame = 0
Query:   47 SRTVHSSSARDS-KVAHLKGMQP------SNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            SR   SSSA  S + A   G  P      S  AE+VV+K+DDL+NWAR  S+WPMTFGLACCAVEMM AGASRYD DRFG +FRPSPRQSDCMIVAGTLTNKMAPALR+VYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL
Sbjct:   17 SRAYSSSSAAGSPRPAPYGGAAPLPPALASKAAEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGLIFRPSPRQSDCMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 180          
BLAST of Ggra9920.t1 vs. uniprot
Match: A0A0K9NZ64 (NADH-quinone oxidoreductase subunit B n=3 Tax=Magnoliopsida TaxID=3398 RepID=A0A0K9NZ64_ZOSMR)

HSP 1 Score: 269 bits (688), Expect = 2.860e-88
Identity = 125/149 (83.89%), Postives = 132/149 (88.59%), Query Frame = 0
Query:   55 ARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            AR S  A +     S   EYVV+K+DDL+NWAR  S+WPMTFGLACCAVEMM AGA+RYD DRFG +FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL
Sbjct:   32 ARPSPPATMSPTGLSKPVEYVVSKVDDLLNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 180          
BLAST of Ggra9920.t1 vs. uniprot
Match: K3Z9R4 (Oxidored_q6 domain-containing protein n=8 Tax=Poaceae TaxID=4479 RepID=K3Z9R4_SETIT)

HSP 1 Score: 269 bits (688), Expect = 2.860e-88
Identity = 122/135 (90.37%), Postives = 128/135 (94.81%), Query Frame = 0
Query:   69 SNRAEYVVTKLDDLVNWARNNSLWPMTFGLACCAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 203
            S  AE+VV+K+DDL+NWAR  S+WPMTFGLACCAVEMM AGASRYD DRFG +FRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL
Sbjct:   46 SKAAEFVVSKIDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL 180          
The following BLAST results are available for this feature:
BLAST of Ggra9920.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3671.590e-12384.13NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
S0F3N17.680e-11690.00Putative NADH2 dehydrogenase (Ubiquinone) chain PS... [more]
NADH-quinone oxidoreductase subunit B 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCBAC2.170e-10592.41NADH-quinone oxidoreductase subunit B 1-like n=1 T... [more]
A0A1X6PJ121.780e-9772.73Oxidored_q6 domain-containing protein n=1 Tax=Porp... [more]
A0A7S0ZIP63.810e-9071.43Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A0L0D5951.150e-8976.36Oxidored_q6 domain-containing protein n=1 Tax=Thec... [more]
A0A0D2LR706.990e-8975.88Oxidored_q6 domain-containing protein n=20 Tax=Gos... [more]
C5YUG31.420e-8879.88Oxidored_q6 domain-containing protein n=1 Tax=Sorg... [more]
A0A0K9NZ642.860e-8883.89NADH-quinone oxidoreductase subunit B n=3 Tax=Magn... [more]
K3Z9R42.860e-8890.37Oxidored_q6 domain-containing protein n=8 Tax=Poac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.12280coord: 58..215
e-value: 1.2E-75
score: 254.5
NoneNo IPR availablePANTHERPTHR11995NADH DEHYDROGENASEcoord: 48..204
NoneNo IPR availablePANTHERPTHR11995:SF28NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIALcoord: 48..204
NoneNo IPR availableSUPERFAMILY56770HydA/Nqo6-likecoord: 73..203
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitPFAMPF01058Oxidored_q6coord: 100..203
e-value: 1.6E-19
score: 70.1
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitTIGRFAMTIGR01957TIGR01957coord: 75..203
e-value: 4.1E-71
score: 235.5
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitPROSITEPS01150COMPLEX1_20Kcoord: 181..197
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitHAMAPMF_01356NDH1_NuoBcoord: 64..214
score: 39.07093

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:97015..98247 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1Ggra9920.t1Gracilaria gracilis GNS1m malemRNAtig00000887_pilon 97015..98247 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MSAYPLRHVARAAVSASRVAPKSAGLSEISSATAITRYAVPNALVLSRTV
HSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLAC
CAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVY
DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
ALLCTYKPSNARRFCIETASSDICVYDVSDIVFAFNHMDCYRWSHAVAEE
NQETEYLLRLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006137NADH_UbQ_OxRdtase-like_20kDa
IPR006138NADH_UQ_OxRdtase_20Kd_su