Ggra9920.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9920.t1
Unique NameGgra9920.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:97015..98247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02534T0
Preferred nameNUO10
PFAMsOxidored_q6
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03940,ko:K16911
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko01110,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map01110,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0000302,GO:0002118,GO:0002121,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0007610,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048856,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051704,GO:0051705,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099174,GO:1901135,GO:1901360,GO:1901564,GO:1901700,GO:1902494,GO:1990204,GO:2000331
Evalue3.27e-89
EggNOG OGsCOG0377@1|root,KOG1687@2759|Eukaryota
EC1.6.5.3,1.6.99.3,3.6.4.13
Descriptionquinone binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9920Ggra9920Gracilaria gracilis GNS1m malegenetig00000887_pilon 97015..98247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1Ggra9920.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 97015..98247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1.stop1Ggra9920.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 97015..97017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1.CDS1Ggra9920.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 97015..97020 -
Ggra9920.t1.CDS2Ggra9920.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 97163..97214 -
Ggra9920.t1.CDS3Ggra9920.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000887_pilon 97330..97449 -
Ggra9920.t1.CDS4Ggra9920.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000887_pilon 97562..98103 -
Ggra9920.t1.CDS5Ggra9920.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000887_pilon 98182..98247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1.exon1Ggra9920.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 97015..97020 -
Ggra9920.t1.exon2Ggra9920.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 97163..97214 -
Ggra9920.t1.exon3Ggra9920.t1.exon3Gracilaria gracilis GNS1m maleexontig00000887_pilon 97330..97449 -
Ggra9920.t1.exon4Ggra9920.t1.exon4Gracilaria gracilis GNS1m maleexontig00000887_pilon 97562..98103 -
Ggra9920.t1.exon5Ggra9920.t1.exon5Gracilaria gracilis GNS1m maleexontig00000887_pilon 98182..98247 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1.intron1Ggra9920.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 97021..97162 -
Ggra9920.t1.intron2Ggra9920.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000887_pilon 97215..97329 -
Ggra9920.t1.intron3Ggra9920.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000887_pilon 97450..97561 -
Ggra9920.t1.intron4Ggra9920.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000887_pilon 98104..98181 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9920.t1.start1Ggra9920.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 98245..98247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MSAYPLRHVARAAVSASRVAPKSAGLSEISSATAITRYAVPNALVLSRTV
HSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLAC
CAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVY
DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
ALLCTYKPSNARRFCIETASSDICVYDVSDIVFAFNHMDCYRWSHAVAEE
NQETEYLLRLG*
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spliced messenger RNA

>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000887_pilon:97015..98247- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGTATCCACTGCGACATGTCGCCCGCGCCGCGGTCTCCGCGTC
TCGTGTTGCACCGAAGAGCGCCGGTCTATCAGAAATCTCCTCCGCCACCG
CAATTACGCGATACGCTGTCCCAAATGCACTGGTGCTTTCTCGTACCGTT
CACTCCAGCTCCGCGCGCGATAGCAAAGTTGCGCATCTCAAGGGCATGCA
GCCATCGAATCGCGCCGAATACGTCGTCACCAAACTCGATGACCTTGTCA
ACTGGGCGCGAAATAATTCTCTGTGGCCCATGACTTTTGGTCTCGCGTGC
TGCGCTGTGGAGATGATGCAGGCCGGTGCGTCACGATATGATCTTGATCG
CTTCGGCTTTCTTTTCCGACCGTCTCCGCGTCAGTCTGATTGCATGATTG
TGGCTGGTACACTCACCAACAAGATGGCACCCGCGTTGAGGAAGGTCTAT
GACCAAATGCCGGAGCCACGCTGGGTCATCTCTATGGGAAGCTGCGCCAA
TGGTGGTGGCTATTACCATTATTCTTATTCCGTTGTGCGCGGCTGTGACC
GCATTGTTCCGGTCGATATCTACGTTCCCGGATGCCCGCCGACTGCCGAA
GCTTTACTATGTACGTACAAACCAAGTAACGCACGCAGATTCTGTATTGA
AACCGCGAGCTCTGACATTTGTGTTTATGATGTTTCTGACATCGTCTTCG
CATTCAATCATATGGATTGTTACAGATGGTCTCATGCAGTTGCAGAAGAA
AATCAAGAGACAGAATACCTTCTACGCCTGGGATAA
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protein sequence of Ggra9920.t1

>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MSAYPLRHVARAAVSASRVAPKSAGLSEISSATAITRYAVPNALVLSRTV
HSSSARDSKVAHLKGMQPSNRAEYVVTKLDDLVNWARNNSLWPMTFGLAC
CAVEMMQAGASRYDLDRFGFLFRPSPRQSDCMIVAGTLTNKMAPALRKVY
DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
ALLCTYKPSNARRFCIETASSDICVYDVSDIVFAFNHMDCYRWSHAVAEE
NQETEYLLRLG*
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mRNA from alignment at tig00000887_pilon:97015..98247-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000887_pilon:97015..98247- (Gracilaria gracilis GNS1m male)
ATGAGCGCGTATCCACTGCGACATGTCGCCCGCGCCGCGGTCTCCGCGTC
TCGTGTTGCACCGAAGGTACGTCGCTACCTCCTGTTCAGTCCGCCCGCCA
CATTCATGCACCCGCTTACTCACCTTTCGTCGCTGCTTCCTTAGAGCGCC
GGTCTATCAGAAATCTCCTCCGCCACCGCAATTACGCGATACGCTGTCCC
AAATGCACTGGTGCTTTCTCGTACCGTTCACTCCAGCTCCGCGCGCGATA
GCAAAGTTGCGCATCTCAAGGGCATGCAGCCATCGAATCGCGCCGAATAC
GTCGTCACCAAACTCGATGACCTTGTCAACTGGGCGCGAAATAATTCTCT
GTGGCCCATGACTTTTGGTCTCGCGTGCTGCGCTGTGGAGATGATGCAGG
CCGGTGCGTCACGATATGATCTTGATCGCTTCGGCTTTCTTTTCCGACCG
TCTCCGCGTCAGTCTGATTGCATGATTGTGGCTGGTACACTCACCAACAA
GATGGCACCCGCGTTGAGGAAGGTCTATGACCAAATGCCGGAGCCACGCT
GGGTCATCTCTATGGGAAGCTGCGCCAATGGTGGTGGCTATTACCATTAT
TCTTATTCCGTTGTGCGCGGCTGTGACCGCATTGTTCCGGTCGATATCTA
CGTTCCCGGATGCCCGCCGACTGCCGAAGCTTTACTGTAAGTCAATGTTC
ACTTTGAAGTAACGCACCTTAAGCTCGACGACGATGTGAGCGAACTAACC
ATAACGGGCACCCATGTCTTGATCAACTTCGTGCTTGGCAAATATCAGAT
GTACGTACAAACCAAGTAACGCACGCAGATTCTGTATTGAAACCGCGAGC
TCTGACATTTGTGTTTATGATGTTTCTGACATCGTCTTCGCATTCAATCA
TATGGATTGTTACAGATGGTAAGTTAGTATATATTAGGCGCTCTTCAATT
TCATCAGCATCATGGTCATGTGTATCTCAACGTGTTCGCTAACGAAAGAA
CTTTTCATGTGCCTTCCCCCTTTTCTACACCAGGTCTCATGCAGTTGCAG
AAGAAAATCAAGAGACAGAATACCTTCTACGCCTGGTTAAAGCAGTAATA
TGTTTAAAAGATGCCCCTCAGATTAGAAACATGCATCCACCGACGCGTAC
CTTCAGCATCCACCATGATCGTTTGCTACCAAGCTGTGCGATATGCTTGC
GTTTTTGTTATTGTCATCATCTAGTAGGGATAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:97015..98247-

>Ggra9920.t1 ID=Ggra9920.t1|Name=Ggra9920.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000887_pilon:97015..98247- (Gracilaria gracilis GNS1m male)
ATGAGCGCGTATCCACTGCGACATGTCGCCCGCGCCGCGGTCTCCGCGTC
TCGTGTTGCACCGAAGAGCGCCGGTCTATCAGAAATCTCCTCCGCCACCG
CAATTACGCGATACGCTGTCCCAAATGCACTGGTGCTTTCTCGTACCGTT
CACTCCAGCTCCGCGCGCGATAGCAAAGTTGCGCATCTCAAGGGCATGCA
GCCATCGAATCGCGCCGAATACGTCGTCACCAAACTCGATGACCTTGTCA
ACTGGGCGCGAAATAATTCTCTGTGGCCCATGACTTTTGGTCTCGCGTGC
TGCGCTGTGGAGATGATGCAGGCCGGTGCGTCACGATATGATCTTGATCG
CTTCGGCTTTCTTTTCCGACCGTCTCCGCGTCAGTCTGATTGCATGATTG
TGGCTGGTACACTCACCAACAAGATGGCACCCGCGTTGAGGAAGGTCTAT
GACCAAATGCCGGAGCCACGCTGGGTCATCTCTATGGGAAGCTGCGCCAA
TGGTGGTGGCTATTACCATTATTCTTATTCCGTTGTGCGCGGCTGTGACC
GCATTGTTCCGGTCGATATCTACGTTCCCGGATGCCCGCCGACTGCCGAA
GCTTTACTATGTACGTACAAACCAAGTAACGCACGCAGATTCTGTATTGA
AACCGCGAGCTCTGACATTTGTGTTTATGATGTTTCTGACATCGTCTTCG
CATTCAATCATATGGATTGTTACAGATGGTCTCATGCAGTTGCAGAAGAA
AATCAAGAGACAGAATACCTTCTACGCCTGGGATAA
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