Ggra9916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9916.t1
Unique Name	Ggra9916.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	760

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:83277..85556 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703235.1
Preferred name	AMPD2
PFAMs	A_deaminase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00477
KEGG ko	ko:K01490
KEGG Reaction	R00181
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	7.57e-264
EggNOG OGs	COG1816@1\|root,KOG1096@2759\|Eukaryota
EC	3.5.4.6
Description	adenosine-phosphate deaminase activity
COG category	F
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9916	Ggra9916	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 83277..85556 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9916.t1.stop1	Ggra9916.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 83277..83279 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9916.t1.CDS1	Ggra9916.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 83277..85556 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9916.t1.exon1	Ggra9916.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 83277..85556 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9916.t1.start1	Ggra9916.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 85554..85556 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9916.t1	Ggra9916.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 83277..85556 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:83277..85556-
coding sequence from alignment at tig00000887_pilon:83277..85556-

mRNA sequence

>Ggra9916.t1 ID=Ggra9916.t1|Name=Ggra9916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=760bp
MQAARPNSAPLGAEQREHGASATIGTPTADEDTLATATLDHRRSSMRSAA
ANFKRLAPQSPTHYRRLSIAPAARSPPERVAASKLCAAVALRERWLYRRT
VPEWRAFQSCAPPSPSPSQSHSVLVDPPYDPFAPPPSPPTAHLFRWHAGV
VSVYADADALHKHTALVEGTTLARFANDLVMLSAIMNDPDTRSFCHRRLV
FLQERFNMYILLNDNQERLAQIAVPHRDFYNVSKVDVHVHHSSMANQKHF
LTFIKRKVKSHGDEKVLANRDHPDGEPLTLTQVFNSLNLEPHELSVDTLD
VHADNSTFHRFDRFNLKYNPFGQSRLREIFMKTDNYIKGKYMAELTKQVF
SDLRSTKYQNSEYRISIYGRDIKEWDKLADWFQDHKIFSPNVRWLIQIPR
LYNIYKEMGRLNSFQDMLNNIFNPLFEATVDPTSHPKVASLLQQIVGFDS
VDDESQPQPRVDLRKCGPPQTWNSKENPPYSYYSFFIYSNLAVLNQLRES
KGLNTFTYRPHAGEAGDIDHLATSFLLAHGINHGLNLKKSPVLQYLFYLT
QIGVAMSPLSNNALFCEITKNPLPSFFKRGLNVTLSTDDPLQFAFTREPL
MEEYSVAAQVWKLSNTDLCELARNSVLQSGFEPCVKANWLGSTWYLSGQA
GNDISKTNVPSIRLCYRYETLLEELKIIYNGHVPNDIHVLPTFSHKTGNK
TTPQTGHDDERKHRVQFEAQAKSPFGNGPMQVEPFQHVDGFDAAGLSEDE
EVILDEDEV*

spliced messenger RNA

>Ggra9916.t1 ID=Ggra9916.t1|Name=Ggra9916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2280bp|location=Sequence derived from alignment at tig00000887_pilon:83277..85556- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGGCGCGCCCAAATTCGGCGCCGCTCGGCGCGGAGCAGCGCGA
GCACGGCGCGTCGGCCACAATCGGCACGCCCACGGCCGATGAAGACACGC
TGGCCACGGCCACTCTGGACCACCGTCGCTCGTCCATGCGCTCCGCCGCC
GCCAACTTCAAGCGCCTTGCGCCGCAGTCGCCCACGCACTACCGCCGTCT
CAGCATTGCGCCGGCCGCGCGCTCGCCGCCGGAGCGCGTGGCCGCCTCCA
AGCTGTGCGCCGCCGTCGCGCTGCGTGAGCGCTGGCTCTACCGCCGCACC
GTGCCCGAGTGGCGCGCCTTTCAGTCATGTGCGCCGCCTTCGCCGTCGCC
GTCGCAGTCGCACTCCGTGCTGGTCGACCCGCCTTATGACCCGTTTGCCC
CCCCGCCTTCCCCGCCTACGGCCCACCTGTTTCGCTGGCATGCTGGCGTT
GTTAGCGTGTATGCTGATGCCGATGCGCTGCACAAACACACCGCGCTCGT
GGAGGGTACCACGCTGGCGCGCTTTGCAAACGACCTGGTCATGTTGTCCG
CCATCATGAACGACCCGGACACGCGCTCATTTTGTCACCGCCGCCTCGTC
TTCTTGCAGGAGCGCTTCAACATGTACATTTTGCTCAACGACAACCAGGA
GCGATTGGCGCAGATTGCCGTCCCGCACCGTGACTTTTACAACGTCAGCA
AGGTCGATGTTCACGTTCATCACTCCTCCATGGCCAACCAAAAGCACTTT
CTCACCTTTATCAAGCGCAAGGTCAAGAGCCACGGCGATGAGAAGGTGCT
TGCCAACCGTGACCACCCTGACGGCGAGCCTTTGACCCTTACGCAGGTCT
TCAACTCACTCAACCTTGAACCTCACGAACTCAGCGTTGATACGCTTGAT
GTGCATGCCGATAACTCCACCTTCCATAGATTCGACCGCTTCAACCTCAA
GTACAACCCTTTTGGACAGTCCAGATTGCGTGAGATCTTCATGAAGACCG
ACAATTACATCAAGGGCAAGTATATGGCAGAACTCACAAAGCAGGTCTTT
TCCGATCTGCGCAGCACAAAGTACCAGAACAGCGAGTACCGCATTAGCAT
TTACGGTAGGGATATCAAAGAGTGGGATAAACTTGCCGACTGGTTCCAAG
ATCACAAGATATTCAGTCCCAATGTGCGTTGGCTCATCCAAATTCCACGT
CTATACAACATCTACAAGGAGATGGGAAGGCTAAACTCCTTCCAGGACAT
GTTGAACAACATCTTCAACCCCCTTTTTGAAGCTACTGTGGACCCAACCT
CGCACCCCAAAGTCGCAAGCCTTTTGCAGCAGATTGTCGGATTCGATTCT
GTGGATGACGAGAGTCAGCCACAGCCACGAGTGGATCTCAGAAAGTGTGG
ACCTCCGCAAACATGGAATAGCAAGGAAAATCCACCGTATAGCTACTATT
CGTTCTTCATTTATAGCAACCTTGCTGTGTTGAATCAACTGCGAGAGTCC
AAGGGCCTCAACACCTTCACATATCGTCCACACGCGGGTGAGGCTGGCGA
CATTGATCATCTTGCCACATCATTTCTTCTGGCGCATGGCATCAATCACG
GCCTCAATCTCAAAAAGAGTCCGGTGTTACAGTATTTGTTCTACCTCACG
CAGATCGGAGTGGCGATGAGTCCGTTGAGCAATAACGCTCTGTTTTGCGA
AATTACCAAGAACCCATTGCCGTCCTTCTTCAAACGCGGTCTCAACGTAA
CGCTGTCCACCGATGATCCGCTGCAGTTTGCATTCACGCGCGAACCGCTC
ATGGAGGAGTATTCAGTTGCGGCGCAGGTGTGGAAGCTGTCAAATACCGA
TTTATGTGAGCTAGCGCGAAATTCTGTATTGCAATCTGGATTTGAACCGT
GCGTCAAGGCGAACTGGTTGGGGTCCACTTGGTATCTCAGCGGCCAAGCA
GGAAATGACATCTCAAAGACAAATGTTCCATCAATTCGACTTTGCTACCG
GTACGAGACTCTTCTAGAAGAACTCAAGATTATATACAACGGACACGTGC
CGAATGATATTCATGTGTTGCCGACTTTCTCGCATAAAACGGGCAACAAA
ACGACGCCTCAAACTGGTCATGATGATGAGCGAAAACACCGCGTTCAGTT
TGAGGCTCAGGCCAAGAGCCCTTTTGGCAACGGCCCCATGCAAGTGGAAC
CTTTCCAGCACGTTGATGGTTTTGACGCGGCTGGGTTGTCAGAGGATGAA
GAGGTCATTCTCGATGAAGATGAGGTGTAG

protein sequence of Ggra9916.t1

>Ggra9916.t1 ID=Ggra9916.t1|Name=Ggra9916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=760bp
MQAARPNSAPLGAEQREHGASATIGTPTADEDTLATATLDHRRSSMRSAA
ANFKRLAPQSPTHYRRLSIAPAARSPPERVAASKLCAAVALRERWLYRRT
VPEWRAFQSCAPPSPSPSQSHSVLVDPPYDPFAPPPSPPTAHLFRWHAGV
VSVYADADALHKHTALVEGTTLARFANDLVMLSAIMNDPDTRSFCHRRLV
FLQERFNMYILLNDNQERLAQIAVPHRDFYNVSKVDVHVHHSSMANQKHF
LTFIKRKVKSHGDEKVLANRDHPDGEPLTLTQVFNSLNLEPHELSVDTLD
VHADNSTFHRFDRFNLKYNPFGQSRLREIFMKTDNYIKGKYMAELTKQVF
SDLRSTKYQNSEYRISIYGRDIKEWDKLADWFQDHKIFSPNVRWLIQIPR
LYNIYKEMGRLNSFQDMLNNIFNPLFEATVDPTSHPKVASLLQQIVGFDS
VDDESQPQPRVDLRKCGPPQTWNSKENPPYSYYSFFIYSNLAVLNQLRES
KGLNTFTYRPHAGEAGDIDHLATSFLLAHGINHGLNLKKSPVLQYLFYLT
QIGVAMSPLSNNALFCEITKNPLPSFFKRGLNVTLSTDDPLQFAFTREPL
MEEYSVAAQVWKLSNTDLCELARNSVLQSGFEPCVKANWLGSTWYLSGQA
GNDISKTNVPSIRLCYRYETLLEELKIIYNGHVPNDIHVLPTFSHKTGNK
TTPQTGHDDERKHRVQFEAQAKSPFGNGPMQVEPFQHVDGFDAAGLSEDE
EVILDEDEV*

mRNA from alignment at tig00000887_pilon:83277..85556-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9916.t1 ID=Ggra9916.t1|Name=Ggra9916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2280bp|location=Sequence derived from alignment at tig00000887_pilon:83277..85556- (Gracilaria gracilis GNS1m male)
ATGCAAGCGGCGCGCCCAAATTCGGCGCCGCTCGGCGCGGAGCAGCGCGA
GCACGGCGCGTCGGCCACAATCGGCACGCCCACGGCCGATGAAGACACGC
TGGCCACGGCCACTCTGGACCACCGTCGCTCGTCCATGCGCTCCGCCGCC
GCCAACTTCAAGCGCCTTGCGCCGCAGTCGCCCACGCACTACCGCCGTCT
CAGCATTGCGCCGGCCGCGCGCTCGCCGCCGGAGCGCGTGGCCGCCTCCA
AGCTGTGCGCCGCCGTCGCGCTGCGTGAGCGCTGGCTCTACCGCCGCACC
GTGCCCGAGTGGCGCGCCTTTCAGTCATGTGCGCCGCCTTCGCCGTCGCC
GTCGCAGTCGCACTCCGTGCTGGTCGACCCGCCTTATGACCCGTTTGCCC
CCCCGCCTTCCCCGCCTACGGCCCACCTGTTTCGCTGGCATGCTGGCGTT
GTTAGCGTGTATGCTGATGCCGATGCGCTGCACAAACACACCGCGCTCGT
GGAGGGTACCACGCTGGCGCGCTTTGCAAACGACCTGGTCATGTTGTCCG
CCATCATGAACGACCCGGACACGCGCTCATTTTGTCACCGCCGCCTCGTC
TTCTTGCAGGAGCGCTTCAACATGTACATTTTGCTCAACGACAACCAGGA
GCGATTGGCGCAGATTGCCGTCCCGCACCGTGACTTTTACAACGTCAGCA
AGGTCGATGTTCACGTTCATCACTCCTCCATGGCCAACCAAAAGCACTTT
CTCACCTTTATCAAGCGCAAGGTCAAGAGCCACGGCGATGAGAAGGTGCT
TGCCAACCGTGACCACCCTGACGGCGAGCCTTTGACCCTTACGCAGGTCT
TCAACTCACTCAACCTTGAACCTCACGAACTCAGCGTTGATACGCTTGAT
GTGCATGCCGATAACTCCACCTTCCATAGATTCGACCGCTTCAACCTCAA
GTACAACCCTTTTGGACAGTCCAGATTGCGTGAGATCTTCATGAAGACCG
ACAATTACATCAAGGGCAAGTATATGGCAGAACTCACAAAGCAGGTCTTT
TCCGATCTGCGCAGCACAAAGTACCAGAACAGCGAGTACCGCATTAGCAT
TTACGGTAGGGATATCAAAGAGTGGGATAAACTTGCCGACTGGTTCCAAG
ATCACAAGATATTCAGTCCCAATGTGCGTTGGCTCATCCAAATTCCACGT
CTATACAACATCTACAAGGAGATGGGAAGGCTAAACTCCTTCCAGGACAT
GTTGAACAACATCTTCAACCCCCTTTTTGAAGCTACTGTGGACCCAACCT
CGCACCCCAAAGTCGCAAGCCTTTTGCAGCAGATTGTCGGATTCGATTCT
GTGGATGACGAGAGTCAGCCACAGCCACGAGTGGATCTCAGAAAGTGTGG
ACCTCCGCAAACATGGAATAGCAAGGAAAATCCACCGTATAGCTACTATT
CGTTCTTCATTTATAGCAACCTTGCTGTGTTGAATCAACTGCGAGAGTCC
AAGGGCCTCAACACCTTCACATATCGTCCACACGCGGGTGAGGCTGGCGA
CATTGATCATCTTGCCACATCATTTCTTCTGGCGCATGGCATCAATCACG
GCCTCAATCTCAAAAAGAGTCCGGTGTTACAGTATTTGTTCTACCTCACG
CAGATCGGAGTGGCGATGAGTCCGTTGAGCAATAACGCTCTGTTTTGCGA
AATTACCAAGAACCCATTGCCGTCCTTCTTCAAACGCGGTCTCAACGTAA
CGCTGTCCACCGATGATCCGCTGCAGTTTGCATTCACGCGCGAACCGCTC
ATGGAGGAGTATTCAGTTGCGGCGCAGGTGTGGAAGCTGTCAAATACCGA
TTTATGTGAGCTAGCGCGAAATTCTGTATTGCAATCTGGATTTGAACCGT
GCGTCAAGGCGAACTGGTTGGGGTCCACTTGGTATCTCAGCGGCCAAGCA
GGAAATGACATCTCAAAGACAAATGTTCCATCAATTCGACTTTGCTACCG
GTACGAGACTCTTCTAGAAGAACTCAAGATTATATACAACGGACACGTGC
CGAATGATATTCATGTGTTGCCGACTTTCTCGCATAAAACGGGCAACAAA
ACGACGCCTCAAACTGGTCATGATGATGAGCGAAAACACCGCGTTCAGTT
TGAGGCTCAGGCCAAGAGCCCTTTTGGCAACGGCCCCATGCAAGTGGAAC
CTTTCCAGCACGTTGATGGTTTTGACGCGGCTGGGTTGTCAGAGGATGAA
GAGGTCATTCTCGATGAAGATGAGGTGTAG

Coding sequence (CDS) from alignment at tig00000887_pilon:83277..85556-

>Ggra9916.t1 ID=Ggra9916.t1|Name=Ggra9916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2280bp|location=Sequence derived from alignment at tig00000887_pilon:83277..85556- (Gracilaria gracilis GNS1m male)
ATGCAAGCGGCGCGCCCAAATTCGGCGCCGCTCGGCGCGGAGCAGCGCGA
GCACGGCGCGTCGGCCACAATCGGCACGCCCACGGCCGATGAAGACACGC
TGGCCACGGCCACTCTGGACCACCGTCGCTCGTCCATGCGCTCCGCCGCC
GCCAACTTCAAGCGCCTTGCGCCGCAGTCGCCCACGCACTACCGCCGTCT
CAGCATTGCGCCGGCCGCGCGCTCGCCGCCGGAGCGCGTGGCCGCCTCCA
AGCTGTGCGCCGCCGTCGCGCTGCGTGAGCGCTGGCTCTACCGCCGCACC
GTGCCCGAGTGGCGCGCCTTTCAGTCATGTGCGCCGCCTTCGCCGTCGCC
GTCGCAGTCGCACTCCGTGCTGGTCGACCCGCCTTATGACCCGTTTGCCC
CCCCGCCTTCCCCGCCTACGGCCCACCTGTTTCGCTGGCATGCTGGCGTT
GTTAGCGTGTATGCTGATGCCGATGCGCTGCACAAACACACCGCGCTCGT
GGAGGGTACCACGCTGGCGCGCTTTGCAAACGACCTGGTCATGTTGTCCG
CCATCATGAACGACCCGGACACGCGCTCATTTTGTCACCGCCGCCTCGTC
TTCTTGCAGGAGCGCTTCAACATGTACATTTTGCTCAACGACAACCAGGA
GCGATTGGCGCAGATTGCCGTCCCGCACCGTGACTTTTACAACGTCAGCA
AGGTCGATGTTCACGTTCATCACTCCTCCATGGCCAACCAAAAGCACTTT
CTCACCTTTATCAAGCGCAAGGTCAAGAGCCACGGCGATGAGAAGGTGCT
TGCCAACCGTGACCACCCTGACGGCGAGCCTTTGACCCTTACGCAGGTCT
TCAACTCACTCAACCTTGAACCTCACGAACTCAGCGTTGATACGCTTGAT
GTGCATGCCGATAACTCCACCTTCCATAGATTCGACCGCTTCAACCTCAA
GTACAACCCTTTTGGACAGTCCAGATTGCGTGAGATCTTCATGAAGACCG
ACAATTACATCAAGGGCAAGTATATGGCAGAACTCACAAAGCAGGTCTTT
TCCGATCTGCGCAGCACAAAGTACCAGAACAGCGAGTACCGCATTAGCAT
TTACGGTAGGGATATCAAAGAGTGGGATAAACTTGCCGACTGGTTCCAAG
ATCACAAGATATTCAGTCCCAATGTGCGTTGGCTCATCCAAATTCCACGT
CTATACAACATCTACAAGGAGATGGGAAGGCTAAACTCCTTCCAGGACAT
GTTGAACAACATCTTCAACCCCCTTTTTGAAGCTACTGTGGACCCAACCT
CGCACCCCAAAGTCGCAAGCCTTTTGCAGCAGATTGTCGGATTCGATTCT
GTGGATGACGAGAGTCAGCCACAGCCACGAGTGGATCTCAGAAAGTGTGG
ACCTCCGCAAACATGGAATAGCAAGGAAAATCCACCGTATAGCTACTATT
CGTTCTTCATTTATAGCAACCTTGCTGTGTTGAATCAACTGCGAGAGTCC
AAGGGCCTCAACACCTTCACATATCGTCCACACGCGGGTGAGGCTGGCGA
CATTGATCATCTTGCCACATCATTTCTTCTGGCGCATGGCATCAATCACG
GCCTCAATCTCAAAAAGAGTCCGGTGTTACAGTATTTGTTCTACCTCACG
CAGATCGGAGTGGCGATGAGTCCGTTGAGCAATAACGCTCTGTTTTGCGA
AATTACCAAGAACCCATTGCCGTCCTTCTTCAAACGCGGTCTCAACGTAA
CGCTGTCCACCGATGATCCGCTGCAGTTTGCATTCACGCGCGAACCGCTC
ATGGAGGAGTATTCAGTTGCGGCGCAGGTGTGGAAGCTGTCAAATACCGA
TTTATGTGAGCTAGCGCGAAATTCTGTATTGCAATCTGGATTTGAACCGT
GCGTCAAGGCGAACTGGTTGGGGTCCACTTGGTATCTCAGCGGCCAAGCA
GGAAATGACATCTCAAAGACAAATGTTCCATCAATTCGACTTTGCTACCG
GTACGAGACTCTTCTAGAAGAACTCAAGATTATATACAACGGACACGTGC
CGAATGATATTCATGTGTTGCCGACTTTCTCGCATAAAACGGGCAACAAA
ACGACGCCTCAAACTGGTCATGATGATGAGCGAAAACACCGCGTTCAGTT
TGAGGCTCAGGCCAAGAGCCCTTTTGGCAACGGCCCCATGCAAGTGGAAC
CTTTCCAGCACGTTGATGGTTTTGACGCGGCTGGGTTGTCAGAGGATGAA
GAGGTCATTCTCGATGAAGATGAGGTGTAG