Ggra9393.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9393.t1
Unique NameGgra9393.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:299911..300537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9393Ggra9393Gracilaria gracilis GNS1m malegenetig00000883_pilon 299911..300537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1Ggra9393.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 299911..300537 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1.start1Ggra9393.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 299911..299913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1.CDS1Ggra9393.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 299911..300085 +
Ggra9393.t1.CDS2Ggra9393.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 300182..300537 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1.exon1Ggra9393.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 299911..300085 +
Ggra9393.t1.exon2Ggra9393.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 300182..300537 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1.intron1Ggra9393.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 300086..300181 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9393.t1.stop1Ggra9393.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 300535..300537 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9393.t1 ID=Ggra9393.t1|Name=Ggra9393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MSSEEISVAKLTINDEELEELLDAVDSRTQQQQVFHDLMSDGFLSLARER
YRDPLSTERLGRLVYDLREDVTSSFQIDVQEDEKSGVVSMSRTIADSNST
STTAGSTLRRRRTNEGTKTSNATEKKVKARPDVANSFVAIPSSEVREAIR
CFKLAIDQAVELVNTNSKLVATMDNQ*
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spliced messenger RNA

>Ggra9393.t1 ID=Ggra9393.t1|Name=Ggra9393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000883_pilon:299911..300537+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCGGAAGAGATTTCTGTGGCGAAGCTTACGATCAATGATGAAGA
GCTAGAAGAACTGCTTGACGCGGTGGACAGTAGAACACAACAACAGCAAG
TCTTTCATGACCTTATGAGTGATGGGTTCTTATCGCTCGCACGGGAACGA
TATCGTGATCCTTTATCAACAGAGCGACTGGGGCGACTTGTGTATGACCT
CCGGGAAGATGTAACCAGTAGTTTTCAAATTGACGTTCAAGAAGATGAGA
AAAGTGGAGTGGTTTCCATGAGCAGAACCATTGCCGATAGCAATAGCACA
TCAACAACGGCAGGAAGCACTTTGCGTCGTCGAAGAACGAATGAAGGGAC
CAAGACGTCTAATGCGACAGAAAAGAAAGTTAAGGCGCGTCCTGACGTCG
CAAATTCCTTCGTAGCCATTCCCAGCAGTGAAGTTCGAGAAGCCATCAGA
TGCTTCAAGTTGGCTATTGATCAAGCTGTAGAACTGGTTAATACCAATAG
CAAGCTGGTTGCTACAATGGACAATCAATAG
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protein sequence of Ggra9393.t1

>Ggra9393.t1 ID=Ggra9393.t1|Name=Ggra9393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MSSEEISVAKLTINDEELEELLDAVDSRTQQQQVFHDLMSDGFLSLARER
YRDPLSTERLGRLVYDLREDVTSSFQIDVQEDEKSGVVSMSRTIADSNST
STTAGSTLRRRRTNEGTKTSNATEKKVKARPDVANSFVAIPSSEVREAIR
CFKLAIDQAVELVNTNSKLVATMDNQ*
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mRNA from alignment at tig00000883_pilon:299911..300537+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9393.t1 ID=Ggra9393.t1|Name=Ggra9393.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000883_pilon:299911..300537+ (Gracilaria gracilis GNS1m male)
ATGAGTTCGGAAGAGATTTCTGTGGCGAAGCTTACGATCAATGATGAAGA
GCTAGAAGAACTGCTTGACGCGGTGGACAGTAGAACACAACAACAGCAAG
TCTTTCATGACCTTATGAGTGATGGGTTCTTATCGCTCGCACGGGAACGA
TATCGTGATCCTTTATCAACAGAGCGTACGTATACCTTTGTTTTCGGCCA
TTTTCAAATATGTTGAACCTAGAACCCAACTATTAACGCCGCAACATGTC
TGTGCTTTGTGTCATGAACAGGACTGGGGCGACTTGTGTATGACCTCCGG
GAAGATGTAACCAGTAGTTTTCAAATTGACGTTCAAGAAGATGAGAAAAG
TGGAGTGGTTTCCATGAGCAGAACCATTGCCGATAGCAATAGCACATCAA
CAACGGCAGGAAGCACTTTGCGTCGTCGAAGAACGAATGAAGGGACCAAG
ACGTCTAATGCGACAGAAAAGAAAGTTAAGGCGCGTCCTGACGTCGCAAA
TTCCTTCGTAGCCATTCCCAGCAGTGAAGTTCGAGAAGCCATCAGATGCT
TCAAGTTGGCTATTGATCAAGCTGTAGAACTGGTTAATACCAATAGCAAG
CTGGTTGCTACAATGGACAATCAATAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:299911..300537+

>Ggra9393.t1 ID=Ggra9393.t1|Name=Ggra9393.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000883_pilon:299911..300537+ (Gracilaria gracilis GNS1m male)
ATGAGTTCGGAAGAGATTTCTGTGGCGAAGCTTACGATCAATGATGAAGA
GCTAGAAGAACTGCTTGACGCGGTGGACAGTAGAACACAACAACAGCAAG
TCTTTCATGACCTTATGAGTGATGGGTTCTTATCGCTCGCACGGGAACGA
TATCGTGATCCTTTATCAACAGAGCGACTGGGGCGACTTGTGTATGACCT
CCGGGAAGATGTAACCAGTAGTTTTCAAATTGACGTTCAAGAAGATGAGA
AAAGTGGAGTGGTTTCCATGAGCAGAACCATTGCCGATAGCAATAGCACA
TCAACAACGGCAGGAAGCACTTTGCGTCGTCGAAGAACGAATGAAGGGAC
CAAGACGTCTAATGCGACAGAAAAGAAAGTTAAGGCGCGTCCTGACGTCG
CAAATTCCTTCGTAGCCATTCCCAGCAGTGAAGTTCGAGAAGCCATCAGA
TGCTTCAAGTTGGCTATTGATCAAGCTGTAGAACTGGTTAATACCAATAG
CAAGCTGGTTGCTACAATGGACAATCAATAG
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