Ggra9343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9343.t1
Unique NameGgra9343.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:37394..37876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039321.1
PFAMsCSD
Max annot lvl2759|Eukaryota
Evalue3.3e-09
EggNOG OGs2BQ8T@1|root,2SCCC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9343Ggra9343Gracilaria gracilis GNS1m malegenetig00000883_pilon 37394..37876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9343.t1.start1Ggra9343.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 37394..37396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9343.t1.CDS1Ggra9343.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 37394..37876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9343.t1.exon1Ggra9343.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 37394..37876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9343.t1.stop1Ggra9343.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 37874..37876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9343.t1Ggra9343.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 37394..37876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9343.t1 ID=Ggra9343.t1|Name=Ggra9343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MQAAQQEIPLPDAARHAASPPKVDVINLVSDDDRTPVRRPRPVKPCAELQ
IVAEQLTYTETTTSDASRRRARSRPPLLGVDANQQVVTNFEPGTTDKDVC
LLQHVERFDPVKHYVHPRPACGTFAFADDSRKFCSKCYCLVCEIPAAECP
SWDVHRAIEF*
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spliced messenger RNA

>Ggra9343.t1 ID=Ggra9343.t1|Name=Ggra9343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000883_pilon:37394..37876+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGGCGCAGCAAGAGATACCACTCCCAGATGCAGCGCGCCACGC
TGCCAGCCCGCCGAAAGTGGACGTCATCAACCTCGTTTCGGACGACGACC
GCACGCCAGTACGCCGCCCACGGCCGGTGAAGCCGTGCGCCGAGTTGCAA
ATCGTGGCCGAGCAGTTGACGTACACTGAAACAACAACGTCGGATGCAAG
CCGGCGACGCGCGCGAAGCCGGCCGCCATTGTTGGGCGTGGACGCCAATC
AACAGGTGGTGACAAACTTCGAACCCGGCACGACCGATAAGGACGTATGT
TTGTTGCAACACGTGGAACGCTTTGATCCCGTCAAGCACTACGTGCATCC
GCGCCCGGCGTGCGGCACGTTCGCGTTTGCGGACGATTCGCGCAAGTTTT
GTTCCAAGTGCTACTGTCTCGTGTGCGAGATCCCGGCCGCGGAGTGTCCG
AGCTGGGACGTTCATCGAGCGATTGAATTCTAG
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protein sequence of Ggra9343.t1

>Ggra9343.t1 ID=Ggra9343.t1|Name=Ggra9343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MQAAQQEIPLPDAARHAASPPKVDVINLVSDDDRTPVRRPRPVKPCAELQ
IVAEQLTYTETTTSDASRRRARSRPPLLGVDANQQVVTNFEPGTTDKDVC
LLQHVERFDPVKHYVHPRPACGTFAFADDSRKFCSKCYCLVCEIPAAECP
SWDVHRAIEF*
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mRNA from alignment at tig00000883_pilon:37394..37876+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9343.t1 ID=Ggra9343.t1|Name=Ggra9343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000883_pilon:37394..37876+ (Gracilaria gracilis GNS1m male)
ATGCAGGCGGCGCAGCAAGAGATACCACTCCCAGATGCAGCGCGCCACGC
TGCCAGCCCGCCGAAAGTGGACGTCATCAACCTCGTTTCGGACGACGACC
GCACGCCAGTACGCCGCCCACGGCCGGTGAAGCCGTGCGCCGAGTTGCAA
ATCGTGGCCGAGCAGTTGACGTACACTGAAACAACAACGTCGGATGCAAG
CCGGCGACGCGCGCGAAGCCGGCCGCCATTGTTGGGCGTGGACGCCAATC
AACAGGTGGTGACAAACTTCGAACCCGGCACGACCGATAAGGACGTATGT
TTGTTGCAACACGTGGAACGCTTTGATCCCGTCAAGCACTACGTGCATCC
GCGCCCGGCGTGCGGCACGTTCGCGTTTGCGGACGATTCGCGCAAGTTTT
GTTCCAAGTGCTACTGTCTCGTGTGCGAGATCCCGGCCGCGGAGTGTCCG
AGCTGGGACGTTCATCGAGCGATTGAATTCTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:37394..37876+

>Ggra9343.t1 ID=Ggra9343.t1|Name=Ggra9343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000883_pilon:37394..37876+ (Gracilaria gracilis GNS1m male)
ATGCAGGCGGCGCAGCAAGAGATACCACTCCCAGATGCAGCGCGCCACGC
TGCCAGCCCGCCGAAAGTGGACGTCATCAACCTCGTTTCGGACGACGACC
GCACGCCAGTACGCCGCCCACGGCCGGTGAAGCCGTGCGCCGAGTTGCAA
ATCGTGGCCGAGCAGTTGACGTACACTGAAACAACAACGTCGGATGCAAG
CCGGCGACGCGCGCGAAGCCGGCCGCCATTGTTGGGCGTGGACGCCAATC
AACAGGTGGTGACAAACTTCGAACCCGGCACGACCGATAAGGACGTATGT
TTGTTGCAACACGTGGAACGCTTTGATCCCGTCAAGCACTACGTGCATCC
GCGCCCGGCGTGCGGCACGTTCGCGTTTGCGGACGATTCGCGCAAGTTTT
GTTCCAAGTGCTACTGTCTCGTGTGCGAGATCCCGGCCGCGGAGTGTCCG
AGCTGGGACGTTCATCGAGCGATTGAATTCTAG
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