Ggra8086.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8086.t1
Unique NameGgra8086.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Homology
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BLAST of Ggra8086.t1 vs. uniprot
Match: A0A2V3IEV0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEV0_9FLOR)

HSP 1 Score: 86.7 bits (213), Expect = 2.130e-16
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 0 
Query:    4 LAECHFQDRAATWIMRLERDGKKPASIEELREAMIREFVPANEIAQARIKLMEIRSDEYKKLEDFIAKFEDLILLCNTPPNEPYIYFFNSLPKHYKGKFAEKFPNSQP 111
            +A C  +D A  W  R+   G+  AS+E+L+ AMI+EFVPANE A AR+ L+++R +    LE  I+KF +L  +C TP  E + YF  SLP  ++ K +E++P+ QP
Sbjct:  202 IAVCLLRDHADLWYNRVTLTGEHFASLEQLQAAMIQEFVPANEHANARLSLIKLRMNG--PLEPHISKFRELTDICGTPIIESFTYFQLSLPTLFRKKLSERYPSGQP 307
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BLAST of Ggra8086.t1 vs. uniprot
Match: A0A2V3IQ24 (Retrotrans_gag domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ24_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 2.950e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 0 
Query:    1 MLALAECHFQDRAATWIMRLERDGKKPASIEELREAMIREFVPANEIAQARIKLMEIR 58
            ML LAEC+ QDRAA+W+MRLE + +KP S+EEL++ M+ EFVPANE A A +KLM++R
Sbjct:   91 MLDLAECYLQDRAASWMMRLENENRKPTSLEELQKTMVDEFVPANEKASAPVKLMDLR 148
The following BLAST results are available for this feature:
BLAST of Ggra8086.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEV02.130e-1642.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IQ242.950e-1562.07Retrotrans_gag domain-containing protein n=1 Tax=G... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 4..81
e-value: 3.0E-8
score: 33.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:674075..674788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1Ggra8086.t1Gracilaria gracilis GNS1m malemRNAtig00000867_pilon 674075..674788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MLALAECHFQDRAATWIMRLERDGKKPASIEELREAMIREFVPANEIAQA
RIKLMEIRSDEYKKLEDFIAKFEDLILLCNTPPNEPYIYFFNSLPKHYKG
KFAEKFPNSQPIDRYGGANMQCAFDYARTLELSMRMSSSSSSANQKDKKS
NGYRNKTSKSKGYSADDKDSSQSEKSSGALSWGLAQKGEGKLYRANERYC
ICGRRPSAILLMPAERRLRDAGRKKSQKINSAAPVCG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom