Ggra8086.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8086.t1
Unique NameGgra8086.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:674075..674788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8086Ggra8086Gracilaria gracilis GNS1m malegenetig00000867_pilon 674075..674788 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1.start1Ggra8086.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 674075..674077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1.CDS1Ggra8086.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 674075..674788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1.exon1Ggra8086.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 674075..674788 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1.stop1Ggra8086.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 674786..674788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8086.t1Ggra8086.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 674075..674788 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=238bp
MLALAECHFQDRAATWIMRLERDGKKPASIEELREAMIREFVPANEIAQA
RIKLMEIRSDEYKKLEDFIAKFEDLILLCNTPPNEPYIYFFNSLPKHYKG
KFAEKFPNSQPIDRYGGANMQCAFDYARTLELSMRMSSSSSSANQKDKKS
NGYRNKTSKSKGYSADDKDSSQSEKSSGALSWGLAQKGEGKLYRANERYC
ICGRRPSAILLMPAERRLRDAGRKKSQKINSAAPVCG*
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spliced messenger RNA

>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000867_pilon:674075..674788+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTCTAGCTGAATGCCATTTTCAAGATCGCGCAGCCACTTGGAT
TATGCGTCTTGAGCGTGATGGTAAGAAACCGGCTTCAATAGAAGAACTGC
GGGAAGCTATGATCAGAGAATTCGTACCAGCAAACGAGATTGCTCAAGCT
CGAATCAAACTCATGGAAATTCGTAGTGATGAATACAAGAAGTTGGAAGA
TTTTATTGCAAAGTTCGAAGACCTCATCCTGTTATGCAACACCCCACCCA
ATGAGCCTTATATTTATTTCTTCAACAGCCTACCGAAGCATTACAAGGGT
AAATTTGCAGAGAAGTTTCCTAATTCTCAGCCAATAGACAGATATGGCGG
CGCAAACATGCAATGCGCATTCGACTATGCCAGGACACTGGAGCTGTCGA
TGAGAATGTCTTCTAGTAGTTCTTCTGCGAATCAGAAGGACAAGAAGTCT
AATGGTTATCGCAACAAGACTTCGAAGAGTAAAGGATATAGTGCGGATGA
CAAAGACTCCAGCCAGTCTGAGAAGAGTTCCGGTGCTCTCTCCTGGGGTC
TTGCACAGAAAGGCGAAGGAAAGCTGTATCGTGCTAATGAAAGGTACTGC
ATTTGCGGACGCAGACCTTCAGCGATCCTGCTCATGCCTGCAGAAAGGAG
ATTGAGAGACGCAGGCAGGAAAAAGAGTCAAAAAATTAACTCAGCCGCAC
CTGTGTGCGGCTAA
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protein sequence of Ggra8086.t1

>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MLALAECHFQDRAATWIMRLERDGKKPASIEELREAMIREFVPANEIAQA
RIKLMEIRSDEYKKLEDFIAKFEDLILLCNTPPNEPYIYFFNSLPKHYKG
KFAEKFPNSQPIDRYGGANMQCAFDYARTLELSMRMSSSSSSANQKDKKS
NGYRNKTSKSKGYSADDKDSSQSEKSSGALSWGLAQKGEGKLYRANERYC
ICGRRPSAILLMPAERRLRDAGRKKSQKINSAAPVCG*
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mRNA from alignment at tig00000867_pilon:674075..674788+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000867_pilon:674075..674788+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTCTAGCTGAATGCCATTTTCAAGATCGCGCAGCCACTTGGAT
TATGCGTCTTGAGCGTGATGGTAAGAAACCGGCTTCAATAGAAGAACTGC
GGGAAGCTATGATCAGAGAATTCGTACCAGCAAACGAGATTGCTCAAGCT
CGAATCAAACTCATGGAAATTCGTAGTGATGAATACAAGAAGTTGGAAGA
TTTTATTGCAAAGTTCGAAGACCTCATCCTGTTATGCAACACCCCACCCA
ATGAGCCTTATATTTATTTCTTCAACAGCCTACCGAAGCATTACAAGGGT
AAATTTGCAGAGAAGTTTCCTAATTCTCAGCCAATAGACAGATATGGCGG
CGCAAACATGCAATGCGCATTCGACTATGCCAGGACACTGGAGCTGTCGA
TGAGAATGTCTTCTAGTAGTTCTTCTGCGAATCAGAAGGACAAGAAGTCT
AATGGTTATCGCAACAAGACTTCGAAGAGTAAAGGATATAGTGCGGATGA
CAAAGACTCCAGCCAGTCTGAGAAGAGTTCCGGTGCTCTCTCCTGGGGTC
TTGCACAGAAAGGCGAAGGAAAGCTGTATCGTGCTAATGAAAGGTACTGC
ATTTGCGGACGCAGACCTTCAGCGATCCTGCTCATGCCTGCAGAAAGGAG
ATTGAGAGACGCAGGCAGGAAAAAGAGTCAAAAAATTAACTCAGCCGCAC
CTGTGTGCGGCTAA
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Coding sequence (CDS) from alignment at tig00000867_pilon:674075..674788+

>Ggra8086.t1 ID=Ggra8086.t1|Name=Ggra8086.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000867_pilon:674075..674788+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTCTAGCTGAATGCCATTTTCAAGATCGCGCAGCCACTTGGAT
TATGCGTCTTGAGCGTGATGGTAAGAAACCGGCTTCAATAGAAGAACTGC
GGGAAGCTATGATCAGAGAATTCGTACCAGCAAACGAGATTGCTCAAGCT
CGAATCAAACTCATGGAAATTCGTAGTGATGAATACAAGAAGTTGGAAGA
TTTTATTGCAAAGTTCGAAGACCTCATCCTGTTATGCAACACCCCACCCA
ATGAGCCTTATATTTATTTCTTCAACAGCCTACCGAAGCATTACAAGGGT
AAATTTGCAGAGAAGTTTCCTAATTCTCAGCCAATAGACAGATATGGCGG
CGCAAACATGCAATGCGCATTCGACTATGCCAGGACACTGGAGCTGTCGA
TGAGAATGTCTTCTAGTAGTTCTTCTGCGAATCAGAAGGACAAGAAGTCT
AATGGTTATCGCAACAAGACTTCGAAGAGTAAAGGATATAGTGCGGATGA
CAAAGACTCCAGCCAGTCTGAGAAGAGTTCCGGTGCTCTCTCCTGGGGTC
TTGCACAGAAAGGCGAAGGAAAGCTGTATCGTGCTAATGAAAGGTACTGC
ATTTGCGGACGCAGACCTTCAGCGATCCTGCTCATGCCTGCAGAAAGGAG
ATTGAGAGACGCAGGCAGGAAAAAGAGTCAAAAAATTAACTCAGCCGCAC
CTGTGTGCGGCTAA
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