Ggra9297.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9297.t1
Unique NameGgra9297.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:84118..84651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009630507.1
PFAMsCupin_1
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944
Evalue7.71e-09
EggNOG OGs2BYKQ@1|root,2QQ4A@2759|Eukaryota,37KIT@33090|Viridiplantae,3G7XG@35493|Streptophyta,44MZ6@71274|asterids
DescriptionGermin-like protein subfamily 1 member 17
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9297Ggra9297Gracilaria gracilis GNS1m malegenetig00000863_pilon 84118..84651 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1.start1Ggra9297.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 84118..84120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1.CDS1Ggra9297.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 84118..84651 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1.exon1Ggra9297.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 84118..84651 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1.stop1Ggra9297.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 84649..84651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1Ggra9297.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 84118..84651 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MCRELLLAFTFVLHITLWTPTHSRIASRGSETAFQVRDALPDSAFSLKYE
LGRKPVFPNFTVEVLEVQQFPVLGAVDIQTRLLRFIMEPGSKLPTQLHPR
GNEVIHVVRGAARISFSFESRPSLAVSNLRTVSNVVRDTGIALIPQGLIH
DVECVSERRSCILLSVANTADPGFVVV*
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spliced messenger RNA

>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000863_pilon:84118..84651+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCGCGAGTTGCTACTGGCGTTCACCTTCGTGCTCCACATCACATT
GTGGACCCCCACGCACAGCAGAATCGCAAGCCGTGGCTCTGAGACGGCGT
TTCAGGTACGCGACGCGCTGCCCGATTCGGCGTTCAGCCTGAAGTATGAG
CTGGGAAGAAAGCCGGTGTTCCCGAACTTCACCGTGGAAGTCTTGGAAGT
TCAACAGTTTCCAGTGCTGGGAGCCGTCGATATACAGACCAGGTTGCTGC
GCTTTATCATGGAACCCGGCTCCAAACTGCCAACGCAGCTGCATCCGCGG
GGGAACGAAGTGATCCACGTTGTTCGTGGCGCAGCGCGTATCAGCTTCTC
GTTTGAATCGAGACCGAGTTTGGCGGTGTCCAATCTGAGGACGGTGAGTA
ATGTGGTTCGGGACACCGGCATTGCTCTAATTCCGCAGGGACTTATCCAT
GACGTCGAATGTGTTTCAGAGCGACGGTCTTGTATTTTGCTGTCGGTGGC
CAACACCGCAGACCCCGGCTTCGTGGTGGTGTGA
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protein sequence of Ggra9297.t1

>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MCRELLLAFTFVLHITLWTPTHSRIASRGSETAFQVRDALPDSAFSLKYE
LGRKPVFPNFTVEVLEVQQFPVLGAVDIQTRLLRFIMEPGSKLPTQLHPR
GNEVIHVVRGAARISFSFESRPSLAVSNLRTVSNVVRDTGIALIPQGLIH
DVECVSERRSCILLSVANTADPGFVVV*
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mRNA from alignment at tig00000863_pilon:84118..84651+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000863_pilon:84118..84651+ (Gracilaria gracilis GNS1m male)
ATGTGTCGCGAGTTGCTACTGGCGTTCACCTTCGTGCTCCACATCACATT
GTGGACCCCCACGCACAGCAGAATCGCAAGCCGTGGCTCTGAGACGGCGT
TTCAGGTACGCGACGCGCTGCCCGATTCGGCGTTCAGCCTGAAGTATGAG
CTGGGAAGAAAGCCGGTGTTCCCGAACTTCACCGTGGAAGTCTTGGAAGT
TCAACAGTTTCCAGTGCTGGGAGCCGTCGATATACAGACCAGGTTGCTGC
GCTTTATCATGGAACCCGGCTCCAAACTGCCAACGCAGCTGCATCCGCGG
GGGAACGAAGTGATCCACGTTGTTCGTGGCGCAGCGCGTATCAGCTTCTC
GTTTGAATCGAGACCGAGTTTGGCGGTGTCCAATCTGAGGACGGTGAGTA
ATGTGGTTCGGGACACCGGCATTGCTCTAATTCCGCAGGGACTTATCCAT
GACGTCGAATGTGTTTCAGAGCGACGGTCTTGTATTTTGCTGTCGGTGGC
CAACACCGCAGACCCCGGCTTCGTGGTGGTGTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:84118..84651+

>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000863_pilon:84118..84651+ (Gracilaria gracilis GNS1m male)
ATGTGTCGCGAGTTGCTACTGGCGTTCACCTTCGTGCTCCACATCACATT
GTGGACCCCCACGCACAGCAGAATCGCAAGCCGTGGCTCTGAGACGGCGT
TTCAGGTACGCGACGCGCTGCCCGATTCGGCGTTCAGCCTGAAGTATGAG
CTGGGAAGAAAGCCGGTGTTCCCGAACTTCACCGTGGAAGTCTTGGAAGT
TCAACAGTTTCCAGTGCTGGGAGCCGTCGATATACAGACCAGGTTGCTGC
GCTTTATCATGGAACCCGGCTCCAAACTGCCAACGCAGCTGCATCCGCGG
GGGAACGAAGTGATCCACGTTGTTCGTGGCGCAGCGCGTATCAGCTTCTC
GTTTGAATCGAGACCGAGTTTGGCGGTGTCCAATCTGAGGACGGTGAGTA
ATGTGGTTCGGGACACCGGCATTGCTCTAATTCCGCAGGGACTTATCCAT
GACGTCGAATGTGTTTCAGAGCGACGGTCTTGTATTTTGCTGTCGGTGGC
CAACACCGCAGACCCCGGCTTCGTGGTGGTGTGA
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