Ggra9297.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9297.t1
Unique NameGgra9297.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
BLAST of Ggra9297.t1 vs. uniprot
Match: A0A2V3IBP7 (Oxalate oxidase GF-2.8 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBP7_9FLOR)

HSP 1 Score: 219 bits (557), Expect = 4.270e-70
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = 0
Query:   19 TPTHSRIASRGSETAFQVRDALPDSAFSLKYELGRKPVFPNFTVEVLEVQQFPVLGAVDIQTRLLRFIMEPGSKLPTQLHPRGNEVIHVVRGAARISFSFESRPSLAVSNLRTVSNVVRDTGIALIPQGLIHDVECVSERRSCILLSVANTADPGFVVV 177
            T +H+RI SRGS+TAF+VR+A  DSAF L Y   R   FP+++V+ LE QQFPVLGAVDIQTRLLR +M+PGS+L TQLHPRGNEVIHVVRGAA+ISF+FES PSL    LR V+NVVR   +ALIPQGL+HDVECVS+   CILLSVAN+ADPGFVV+
Sbjct:   20 TFSHARIPSRGSQTAFEVRNAFNDSAFRLPYAEARLSTFPDYSVQSLEAQQFPVLGAVDIQTRLLRIVMQPGSRLATQLHPRGNEVIHVVRGAAKISFTFESDPSLDTV-LRRVTNVVRAREVALIPQGLVHDVECVSKVHPCILLSVANSADPGFVVL 177          
BLAST of Ggra9297.t1 vs. uniprot
Match: A0A2G3AKW4 (Germin-like protein n=3 Tax=Capsicum TaxID=4071 RepID=A0A2G3AKW4_CAPAN)

HSP 1 Score: 58.2 bits (139), Expect = 4.320e-7
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 0
Query:   54 KPVFPNF--TVEVLEVQQFPVLGAVDIQTRLLRFIMEPGSKLPTQLHPRGNEVIHVVRGAARISFSFESRPSLAVSNLRTVSNVVRDTGIALIPQGLIHDVECVSERRSCILLSVANTADPGFVVV 177
            + V+P F   V V+ V++ P L  + I T   R  +EP S  P   HPRG E++ V++G   +   F S P+  +   R +S ++    + + P+GLIH +  V  +++  L    N+ +PG + +
Sbjct:   72 RDVYPKFGIAVTVVGVKEMPGLNTLGISTS--RADIEPQSLFPFHTHPRGTELVTVLKGTLLVGI-FVSDPA-NIFKTRLLSKILYPGDVFVFPRGLIHFLYNVGNKKAS-LFGTYNSQNPGLITI 192          
The following BLAST results are available for this feature:
BLAST of Ggra9297.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IBP74.270e-7069.81Oxalate oxidase GF-2.8 n=2 Tax=Gracilariopsis chor... [more]
A0A2G3AKW44.320e-729.37Germin-like protein n=3 Tax=Capsicum TaxID=4071 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 25..177
e-value: 9.3E-14
score: 53.3
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 61..171
e-value: 7.6E-8
score: 32.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 46..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:84118..84651 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9297.t1Ggra9297.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 84118..84651 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9297.t1 ID=Ggra9297.t1|Name=Ggra9297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MCRELLLAFTFVLHITLWTPTHSRIASRGSETAFQVRDALPDSAFSLKYE
LGRKPVFPNFTVEVLEVQQFPVLGAVDIQTRLLRFIMEPGSKLPTQLHPR
GNEVIHVVRGAARISFSFESRPSLAVSNLRTVSNVVRDTGIALIPQGLIH
DVECVSERRSCILLSVANTADPGFVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR006045Cupin_1
IPR011051RmlC_Cupin_sf