Ggra9314.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9314.t1
Unique Name	Ggra9314.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	612

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:576715..578550 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9314	Ggra9314	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 576715..578550 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9314.t1.stop1	Ggra9314.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 576715..576717 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9314.t1.CDS1	Ggra9314.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 576715..578550 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9314.t1.exon1	Ggra9314.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 576715..578550 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9314.t1.start1	Ggra9314.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 578548..578550 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9314.t1	Ggra9314.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 576715..578550 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:576715..578550-
coding sequence from alignment at tig00000863_pilon:576715..578550-

mRNA sequence

>Ggra9314.t1 ID=Ggra9314.t1|Name=Ggra9314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp
MASSTSSRTAAFDDRLKKSVERFQSTPETGMLLRDAASYILEMYPVYDSS
ESTITLTSAKRAEVEAALKGFLPAPESILDPSLFLFPLFPILLVRETAML
YELGDVPEGLYTTLQVSNRETANESLVTYVWFMNFIDASRETMHIGVELS
RRSSSASRLSAAIRHATSGQQPYQMHMQVPEVLPSSQHVQAAAPMETAPP
AASVAVHSHYDDTQNRNQNFDSRQTPQQSMGSHGNRFGSSDDTRKASYVF
QQFRDNRFTGDIKQSIEMTLRDYNVCAHQHRLSPAQKADYFVNVLDGPAR
TFFFNNAKDGMTFEDMASLMISKFNSNARQLQVQSMLKTMRIEKIMSEHE
ITSHSEDLKKLVSVIEELSPLCPPDFRSEAHKIAFLRNAVLGTSWANTPI
SNIVTLKYSFNAFITALREHLQLEDEIKEVNSSSMTHIVGEETLFQQYGR
NPKYVRKHPPRWSTNDTGRDDWNSSRLGTKALSFEESRRRNECHKCRSQW
KPGHRCQPGAIRNHIRQRMKNGETAVHIISDMVLAMEGEISENVEDGTDV
NGNTNGTFNVEEVCLFDELTSKDISTAREVEMADQEWYTNHLPASLGSSD
MCSRAADQDFC*

spliced messenger RNA

>Ggra9314.t1 ID=Ggra9314.t1|Name=Ggra9314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000863_pilon:576715..578550- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTTCAACGAGTTCACGTACGGCTGCGTTTGACGACCGATTGAA
GAAGTCAGTGGAACGATTCCAATCAACTCCGGAAACTGGTATGTTGTTGC
GTGATGCTGCAAGCTACATTCTTGAGATGTACCCCGTCTACGACAGCTCT
GAAAGCACAATTACACTTACCTCCGCAAAGAGGGCTGAAGTGGAAGCTGC
ACTCAAAGGTTTCCTGCCTGCCCCTGAATCGATCCTGGATCCTTCTCTTT
TTCTCTTTCCCCTCTTCCCAATACTTCTCGTTCGAGAAACCGCCATGCTG
TATGAACTTGGTGACGTTCCCGAAGGACTATACACAACATTGCAGGTATC
GAACCGCGAGACAGCTAATGAATCACTGGTTACATACGTCTGGTTCATGA
ATTTCATTGACGCATCTCGTGAAACGATGCACATCGGCGTAGAGCTCTCT
CGTCGGAGCAGTTCCGCGTCACGATTATCAGCAGCTATCAGGCATGCTAC
AAGTGGTCAGCAGCCCTACCAGATGCATATGCAAGTACCTGAAGTCCTTC
CATCCTCACAGCACGTCCAAGCTGCGGCACCGATGGAAACTGCACCACCT
GCAGCTTCTGTGGCAGTACATTCGCACTATGATGACACCCAGAATCGGAA
TCAAAACTTTGATTCTCGCCAAACACCGCAGCAAAGCATGGGATCCCATG
GGAATCGTTTCGGATCATCTGATGATACCCGTAAGGCTAGTTACGTCTTT
CAACAGTTCCGAGACAACCGCTTCACTGGTGATATCAAGCAGTCGATCGA
AATGACTCTTCGAGATTACAATGTGTGTGCTCACCAGCACCGTTTAAGTC
CTGCGCAAAAGGCAGACTACTTTGTCAATGTTCTTGATGGACCTGCTCGG
ACATTCTTTTTTAACAACGCGAAAGATGGAATGACCTTCGAGGACATGGC
GTCGCTGATGATCTCCAAGTTCAACAGTAACGCACGTCAACTACAAGTCC
AGAGTATGTTGAAAACTATGCGCATCGAAAAGATAATGTCCGAACACGAA
ATAACTTCTCACTCGGAAGACCTAAAGAAGCTTGTGAGTGTCATTGAGGA
GTTGTCACCTCTGTGTCCACCCGATTTCCGATCCGAAGCGCACAAGATTG
CCTTCCTTCGAAACGCAGTGTTGGGAACCTCGTGGGCAAACACTCCTATA
AGCAACATCGTCACACTAAAGTACTCCTTCAATGCATTTATCACAGCACT
TCGGGAGCACCTTCAGCTCGAGGACGAGATAAAGGAGGTCAACAGCAGCT
CTATGACGCATATTGTTGGTGAAGAAACGCTATTTCAGCAGTACGGTCGC
AATCCTAAGTATGTTCGTAAGCACCCTCCGCGATGGAGCACCAACGATAC
CGGACGCGATGACTGGAATTCCTCACGATTGGGCACAAAGGCTCTTAGTT
TCGAAGAAAGCAGGCGAAGGAACGAGTGTCACAAATGCCGCTCGCAATGG
AAACCGGGGCATAGGTGTCAACCTGGGGCTATCCGAAACCACATCCGACA
GAGAATGAAGAACGGTGAGACTGCAGTGCACATTATATCAGATATGGTTC
TTGCAATGGAGGGAGAGATTTCTGAAAATGTCGAAGACGGGACGGATGTA
AATGGAAACACAAATGGGACATTCAATGTCGAGGAAGTTTGTCTGTTCGA
TGAGCTGACCAGTAAGGACATAAGTACTGCAAGAGAAGTTGAAATGGCGG
ACCAAGAATGGTACACCAATCATCTCCCAGCTTCACTCGGTTCCAGCGAC
ATGTGTAGTCGAGCAGCTGACCAGGATTTCTGCTAG

protein sequence of Ggra9314.t1

>Ggra9314.t1 ID=Ggra9314.t1|Name=Ggra9314.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=612bp
MASSTSSRTAAFDDRLKKSVERFQSTPETGMLLRDAASYILEMYPVYDSS
ESTITLTSAKRAEVEAALKGFLPAPESILDPSLFLFPLFPILLVRETAML
YELGDVPEGLYTTLQVSNRETANESLVTYVWFMNFIDASRETMHIGVELS
RRSSSASRLSAAIRHATSGQQPYQMHMQVPEVLPSSQHVQAAAPMETAPP
AASVAVHSHYDDTQNRNQNFDSRQTPQQSMGSHGNRFGSSDDTRKASYVF
QQFRDNRFTGDIKQSIEMTLRDYNVCAHQHRLSPAQKADYFVNVLDGPAR
TFFFNNAKDGMTFEDMASLMISKFNSNARQLQVQSMLKTMRIEKIMSEHE
ITSHSEDLKKLVSVIEELSPLCPPDFRSEAHKIAFLRNAVLGTSWANTPI
SNIVTLKYSFNAFITALREHLQLEDEIKEVNSSSMTHIVGEETLFQQYGR
NPKYVRKHPPRWSTNDTGRDDWNSSRLGTKALSFEESRRRNECHKCRSQW
KPGHRCQPGAIRNHIRQRMKNGETAVHIISDMVLAMEGEISENVEDGTDV
NGNTNGTFNVEEVCLFDELTSKDISTAREVEMADQEWYTNHLPASLGSSD
MCSRAADQDFC*

mRNA from alignment at tig00000863_pilon:576715..578550-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9314.t1 ID=Ggra9314.t1|Name=Ggra9314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000863_pilon:576715..578550- (Gracilaria gracilis GNS1m male)
ATGGCATCTTCAACGAGTTCACGTACGGCTGCGTTTGACGACCGATTGAA
GAAGTCAGTGGAACGATTCCAATCAACTCCGGAAACTGGTATGTTGTTGC
GTGATGCTGCAAGCTACATTCTTGAGATGTACCCCGTCTACGACAGCTCT
GAAAGCACAATTACACTTACCTCCGCAAAGAGGGCTGAAGTGGAAGCTGC
ACTCAAAGGTTTCCTGCCTGCCCCTGAATCGATCCTGGATCCTTCTCTTT
TTCTCTTTCCCCTCTTCCCAATACTTCTCGTTCGAGAAACCGCCATGCTG
TATGAACTTGGTGACGTTCCCGAAGGACTATACACAACATTGCAGGTATC
GAACCGCGAGACAGCTAATGAATCACTGGTTACATACGTCTGGTTCATGA
ATTTCATTGACGCATCTCGTGAAACGATGCACATCGGCGTAGAGCTCTCT
CGTCGGAGCAGTTCCGCGTCACGATTATCAGCAGCTATCAGGCATGCTAC
AAGTGGTCAGCAGCCCTACCAGATGCATATGCAAGTACCTGAAGTCCTTC
CATCCTCACAGCACGTCCAAGCTGCGGCACCGATGGAAACTGCACCACCT
GCAGCTTCTGTGGCAGTACATTCGCACTATGATGACACCCAGAATCGGAA
TCAAAACTTTGATTCTCGCCAAACACCGCAGCAAAGCATGGGATCCCATG
GGAATCGTTTCGGATCATCTGATGATACCCGTAAGGCTAGTTACGTCTTT
CAACAGTTCCGAGACAACCGCTTCACTGGTGATATCAAGCAGTCGATCGA
AATGACTCTTCGAGATTACAATGTGTGTGCTCACCAGCACCGTTTAAGTC
CTGCGCAAAAGGCAGACTACTTTGTCAATGTTCTTGATGGACCTGCTCGG
ACATTCTTTTTTAACAACGCGAAAGATGGAATGACCTTCGAGGACATGGC
GTCGCTGATGATCTCCAAGTTCAACAGTAACGCACGTCAACTACAAGTCC
AGAGTATGTTGAAAACTATGCGCATCGAAAAGATAATGTCCGAACACGAA
ATAACTTCTCACTCGGAAGACCTAAAGAAGCTTGTGAGTGTCATTGAGGA
GTTGTCACCTCTGTGTCCACCCGATTTCCGATCCGAAGCGCACAAGATTG
CCTTCCTTCGAAACGCAGTGTTGGGAACCTCGTGGGCAAACACTCCTATA
AGCAACATCGTCACACTAAAGTACTCCTTCAATGCATTTATCACAGCACT
TCGGGAGCACCTTCAGCTCGAGGACGAGATAAAGGAGGTCAACAGCAGCT
CTATGACGCATATTGTTGGTGAAGAAACGCTATTTCAGCAGTACGGTCGC
AATCCTAAGTATGTTCGTAAGCACCCTCCGCGATGGAGCACCAACGATAC
CGGACGCGATGACTGGAATTCCTCACGATTGGGCACAAAGGCTCTTAGTT
TCGAAGAAAGCAGGCGAAGGAACGAGTGTCACAAATGCCGCTCGCAATGG
AAACCGGGGCATAGGTGTCAACCTGGGGCTATCCGAAACCACATCCGACA
GAGAATGAAGAACGGTGAGACTGCAGTGCACATTATATCAGATATGGTTC
TTGCAATGGAGGGAGAGATTTCTGAAAATGTCGAAGACGGGACGGATGTA
AATGGAAACACAAATGGGACATTCAATGTCGAGGAAGTTTGTCTGTTCGA
TGAGCTGACCAGTAAGGACATAAGTACTGCAAGAGAAGTTGAAATGGCGG
ACCAAGAATGGTACACCAATCATCTCCCAGCTTCACTCGGTTCCAGCGAC
ATGTGTAGTCGAGCAGCTGACCAGGATTTCTGCTAG

Coding sequence (CDS) from alignment at tig00000863_pilon:576715..578550-

>Ggra9314.t1 ID=Ggra9314.t1|Name=Ggra9314.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00000863_pilon:576715..578550- (Gracilaria gracilis GNS1m male)
ATGGCATCTTCAACGAGTTCACGTACGGCTGCGTTTGACGACCGATTGAA
GAAGTCAGTGGAACGATTCCAATCAACTCCGGAAACTGGTATGTTGTTGC
GTGATGCTGCAAGCTACATTCTTGAGATGTACCCCGTCTACGACAGCTCT
GAAAGCACAATTACACTTACCTCCGCAAAGAGGGCTGAAGTGGAAGCTGC
ACTCAAAGGTTTCCTGCCTGCCCCTGAATCGATCCTGGATCCTTCTCTTT
TTCTCTTTCCCCTCTTCCCAATACTTCTCGTTCGAGAAACCGCCATGCTG
TATGAACTTGGTGACGTTCCCGAAGGACTATACACAACATTGCAGGTATC
GAACCGCGAGACAGCTAATGAATCACTGGTTACATACGTCTGGTTCATGA
ATTTCATTGACGCATCTCGTGAAACGATGCACATCGGCGTAGAGCTCTCT
CGTCGGAGCAGTTCCGCGTCACGATTATCAGCAGCTATCAGGCATGCTAC
AAGTGGTCAGCAGCCCTACCAGATGCATATGCAAGTACCTGAAGTCCTTC
CATCCTCACAGCACGTCCAAGCTGCGGCACCGATGGAAACTGCACCACCT
GCAGCTTCTGTGGCAGTACATTCGCACTATGATGACACCCAGAATCGGAA
TCAAAACTTTGATTCTCGCCAAACACCGCAGCAAAGCATGGGATCCCATG
GGAATCGTTTCGGATCATCTGATGATACCCGTAAGGCTAGTTACGTCTTT
CAACAGTTCCGAGACAACCGCTTCACTGGTGATATCAAGCAGTCGATCGA
AATGACTCTTCGAGATTACAATGTGTGTGCTCACCAGCACCGTTTAAGTC
CTGCGCAAAAGGCAGACTACTTTGTCAATGTTCTTGATGGACCTGCTCGG
ACATTCTTTTTTAACAACGCGAAAGATGGAATGACCTTCGAGGACATGGC
GTCGCTGATGATCTCCAAGTTCAACAGTAACGCACGTCAACTACAAGTCC
AGAGTATGTTGAAAACTATGCGCATCGAAAAGATAATGTCCGAACACGAA
ATAACTTCTCACTCGGAAGACCTAAAGAAGCTTGTGAGTGTCATTGAGGA
GTTGTCACCTCTGTGTCCACCCGATTTCCGATCCGAAGCGCACAAGATTG
CCTTCCTTCGAAACGCAGTGTTGGGAACCTCGTGGGCAAACACTCCTATA
AGCAACATCGTCACACTAAAGTACTCCTTCAATGCATTTATCACAGCACT
TCGGGAGCACCTTCAGCTCGAGGACGAGATAAAGGAGGTCAACAGCAGCT
CTATGACGCATATTGTTGGTGAAGAAACGCTATTTCAGCAGTACGGTCGC
AATCCTAAGTATGTTCGTAAGCACCCTCCGCGATGGAGCACCAACGATAC
CGGACGCGATGACTGGAATTCCTCACGATTGGGCACAAAGGCTCTTAGTT
TCGAAGAAAGCAGGCGAAGGAACGAGTGTCACAAATGCCGCTCGCAATGG
AAACCGGGGCATAGGTGTCAACCTGGGGCTATCCGAAACCACATCCGACA
GAGAATGAAGAACGGTGAGACTGCAGTGCACATTATATCAGATATGGTTC
TTGCAATGGAGGGAGAGATTTCTGAAAATGTCGAAGACGGGACGGATGTA
AATGGAAACACAAATGGGACATTCAATGTCGAGGAAGTTTGTCTGTTCGA
TGAGCTGACCAGTAAGGACATAAGTACTGCAAGAGAAGTTGAAATGGCGG
ACCAAGAATGGTACACCAATCATCTCCCAGCTTCACTCGGTTCCAGCGAC
ATGTGTAGTCGAGCAGCTGACCAGGATTTCTGCTAG