Ggra8933.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8933.t1
Unique NameGgra8933.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length69
Homology
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BLAST of Ggra8933.t1 vs. uniprot
Match: A0A2V3J4M8 (Transmembrane protein 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4M8_9FLOR)

HSP 1 Score: 67.8 bits (164), Expect = 1.670e-12
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0 
Query:    1 MLAFVSGPFIIIANFIVIGMFLRLVKLYARRKRREAMIRRQGPTS 45
            MLAFV GPFII+ANFI+IGMFLRLVKLYA+RKRREAM++RQ   S
Sbjct:  109 MLAFVCGPFIILANFIMIGMFLRLVKLYAKRKRREAMMQRQNQNS 153
The following BLAST results are available for this feature:
BLAST of Ggra8933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4M81.670e-1280.00Transmembrane protein 18 n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..68
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:858767..859048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1Ggra8933.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 858767..859048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=69bp
MLAFVSGPFIIIANFIVIGMFLRLVKLYARRKRREAMIRRQGPTSSEQAE
NASASVASDRVTSTKKSN*
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