Ggra8933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8933.t1
Unique NameGgra8933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:858767..859048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8933Ggra8933Gracilaria gracilis GNS1m malegenetig00000860_pilon 858767..859048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1Ggra8933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 858767..859048 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1.stop1Ggra8933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 858767..858769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1.CDS1Ggra8933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 858767..858922 -
Ggra8933.t1.CDS2Ggra8933.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 858998..859048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1.exon1Ggra8933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 858767..858922 -
Ggra8933.t1.exon2Ggra8933.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 858998..859048 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1.intron1Ggra8933.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 858923..858997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8933.t1.start1Ggra8933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 859046..859048 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=69bp
MLAFVSGPFIIIANFIVIGMFLRLVKLYARRKRREAMIRRQGPTSSEQAE
NASASVASDRVTSTKKSN*
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spliced messenger RNA

>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00000860_pilon:858767..859048- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGTTCGTATCTGGACCTTTCATCATAATTGCAAACTTCATAGT
GATTGGCATGTTTCTCCGCCTCGTCAAATTGTATGCTCGTCGCAAACGGA
GAGAGGCTATGATTCGAAGACAGGGGCCCACTTCAAGTGAACAGGCAGAG
AATGCATCTGCAAGTGTGGCTTCAGATAGAGTAACAAGTACTAAGAAGAG
CAATTAA
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protein sequence of Ggra8933.t1

>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=69bp
MLAFVSGPFIIIANFIVIGMFLRLVKLYARRKRREAMIRRQGPTSSEQAE
NASASVASDRVTSTKKSN*
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mRNA from alignment at tig00000860_pilon:858767..859048-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp|location=Sequence derived from alignment at tig00000860_pilon:858767..859048- (Gracilaria gracilis GNS1m male)
ATGCTTGCGTTCGTATCTGGACCTTTCATCATAATTGCAAACTTCATAGT
GGTAAGCATATTCCAAGCTCTTCAAAGCTTTTCGTATTTCACCAGCGAAA
CTAACTTTTGACGATTGAGTGCGCAGATTGGCATGTTTCTCCGCCTCGTC
AAATTGTATGCTCGTCGCAAACGGAGAGAGGCTATGATTCGAAGACAGGG
GCCCACTTCAAGTGAACAGGCAGAGAATGCATCTGCAAGTGTGGCTTCAG
ATAGAGTAACAAGTACTAAGAAGAGCAATTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:858767..859048-

>Ggra8933.t1 ID=Ggra8933.t1|Name=Ggra8933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00000860_pilon:858767..859048- (Gracilaria gracilis GNS1m male)
ATGCTTGCGTTCGTATCTGGACCTTTCATCATAATTGCAAACTTCATAGT
GATTGGCATGTTTCTCCGCCTCGTCAAATTGTATGCTCGTCGCAAACGGA
GAGAGGCTATGATTCGAAGACAGGGGCCCACTTCAAGTGAACAGGCAGAG
AATGCATCTGCAAGTGTGGCTTCAGATAGAGTAACAAGTACTAAGAAGAG
CAATTAA
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