Ggra4319.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4319.t1
Unique NameGgra4319.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:621352..622101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4319Ggra4319Gracilaria gracilis GNS1m malegenetig00000022_pilon 621352..622101 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4319.t1.stop1Ggra4319.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 621352..621354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4319.t1.CDS1Ggra4319.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 621352..622101 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4319.t1.exon1Ggra4319.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 621352..622101 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4319.t1.start1Ggra4319.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 622099..622101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4319.t1Ggra4319.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 621352..622101 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=250bp
MASVANFLSLSLFAFCCALLTAVNAEDACNISTLRVTGSNSLFALACRCG
DAPEFLGRAVRFLDSHIPDSVAQEEVTVDCIEHRKPQLARACAQSSDRFE
RQAAHVLEECLNERPINPTREGMMPFTFNKDRCITDFRELDVERVEALLA
CGCPQRPGYIVNPGVIQFITSGSPLGAGVGQQVLQLCTSQALPQLNDACR
NMPERFALRGAQAFNVCCKRARRLFDLDKLLCQATVPDDILQLRLSFVE*
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spliced messenger RNA

>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000022_pilon:621352..622101- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGTCGCCAATTTTCTCTCGCTTTCTTTGTTTGCTTTCTGCTG
CGCCCTTCTCACTGCTGTGAACGCGGAGGATGCTTGCAACATCTCCACAC
TTCGTGTTACGGGCAGCAATAGTCTTTTCGCGCTTGCTTGCCGTTGTGGC
GATGCTCCAGAGTTTCTAGGCCGTGCCGTCCGCTTTCTAGACTCTCATAT
ACCGGACAGCGTCGCACAGGAAGAAGTAACGGTGGACTGCATCGAGCATC
GAAAGCCGCAACTCGCGCGAGCATGTGCTCAAAGCAGTGATCGTTTTGAA
AGACAAGCAGCGCATGTGCTAGAAGAGTGTTTGAACGAACGACCCATTAA
CCCTACGAGAGAAGGCATGATGCCCTTTACGTTCAATAAGGACCGATGCA
TCACCGATTTCCGCGAGCTGGATGTTGAAAGAGTGGAAGCTCTGTTGGCT
TGCGGGTGCCCGCAGCGGCCTGGATATATCGTCAACCCTGGCGTGATTCA
ATTCATCACGAGCGGCTCTCCACTCGGTGCTGGTGTGGGGCAACAGGTTC
TTCAGCTGTGCACCAGCCAGGCTTTGCCGCAGTTGAACGATGCGTGCCGT
AACATGCCTGAACGTTTCGCTCTTCGAGGCGCACAGGCGTTCAACGTGTG
TTGCAAACGCGCTCGTCGGTTGTTTGACCTCGACAAACTCCTCTGTCAGG
CGACCGTCCCTGACGACATCTTGCAACTGCGTCTTTCTTTCGTAGAGTAA
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protein sequence of Ggra4319.t1

>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MASVANFLSLSLFAFCCALLTAVNAEDACNISTLRVTGSNSLFALACRCG
DAPEFLGRAVRFLDSHIPDSVAQEEVTVDCIEHRKPQLARACAQSSDRFE
RQAAHVLEECLNERPINPTREGMMPFTFNKDRCITDFRELDVERVEALLA
CGCPQRPGYIVNPGVIQFITSGSPLGAGVGQQVLQLCTSQALPQLNDACR
NMPERFALRGAQAFNVCCKRARRLFDLDKLLCQATVPDDILQLRLSFVE*
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mRNA from alignment at tig00000022_pilon:621352..622101-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000022_pilon:621352..622101- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTCGCCAATTTTCTCTCGCTTTCTTTGTTTGCTTTCTGCTG
CGCCCTTCTCACTGCTGTGAACGCGGAGGATGCTTGCAACATCTCCACAC
TTCGTGTTACGGGCAGCAATAGTCTTTTCGCGCTTGCTTGCCGTTGTGGC
GATGCTCCAGAGTTTCTAGGCCGTGCCGTCCGCTTTCTAGACTCTCATAT
ACCGGACAGCGTCGCACAGGAAGAAGTAACGGTGGACTGCATCGAGCATC
GAAAGCCGCAACTCGCGCGAGCATGTGCTCAAAGCAGTGATCGTTTTGAA
AGACAAGCAGCGCATGTGCTAGAAGAGTGTTTGAACGAACGACCCATTAA
CCCTACGAGAGAAGGCATGATGCCCTTTACGTTCAATAAGGACCGATGCA
TCACCGATTTCCGCGAGCTGGATGTTGAAAGAGTGGAAGCTCTGTTGGCT
TGCGGGTGCCCGCAGCGGCCTGGATATATCGTCAACCCTGGCGTGATTCA
ATTCATCACGAGCGGCTCTCCACTCGGTGCTGGTGTGGGGCAACAGGTTC
TTCAGCTGTGCACCAGCCAGGCTTTGCCGCAGTTGAACGATGCGTGCCGT
AACATGCCTGAACGTTTCGCTCTTCGAGGCGCACAGGCGTTCAACGTGTG
TTGCAAACGCGCTCGTCGGTTGTTTGACCTCGACAAACTCCTCTGTCAGG
CGACCGTCCCTGACGACATCTTGCAACTGCGTCTTTCTTTCGTAGAGTAA
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Coding sequence (CDS) from alignment at tig00000022_pilon:621352..622101-

>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000022_pilon:621352..622101- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTCGCCAATTTTCTCTCGCTTTCTTTGTTTGCTTTCTGCTG
CGCCCTTCTCACTGCTGTGAACGCGGAGGATGCTTGCAACATCTCCACAC
TTCGTGTTACGGGCAGCAATAGTCTTTTCGCGCTTGCTTGCCGTTGTGGC
GATGCTCCAGAGTTTCTAGGCCGTGCCGTCCGCTTTCTAGACTCTCATAT
ACCGGACAGCGTCGCACAGGAAGAAGTAACGGTGGACTGCATCGAGCATC
GAAAGCCGCAACTCGCGCGAGCATGTGCTCAAAGCAGTGATCGTTTTGAA
AGACAAGCAGCGCATGTGCTAGAAGAGTGTTTGAACGAACGACCCATTAA
CCCTACGAGAGAAGGCATGATGCCCTTTACGTTCAATAAGGACCGATGCA
TCACCGATTTCCGCGAGCTGGATGTTGAAAGAGTGGAAGCTCTGTTGGCT
TGCGGGTGCCCGCAGCGGCCTGGATATATCGTCAACCCTGGCGTGATTCA
ATTCATCACGAGCGGCTCTCCACTCGGTGCTGGTGTGGGGCAACAGGTTC
TTCAGCTGTGCACCAGCCAGGCTTTGCCGCAGTTGAACGATGCGTGCCGT
AACATGCCTGAACGTTTCGCTCTTCGAGGCGCACAGGCGTTCAACGTGTG
TTGCAAACGCGCTCGTCGGTTGTTTGACCTCGACAAACTCCTCTGTCAGG
CGACCGTCCCTGACGACATCTTGCAACTGCGTCTTTCTTTCGTAGAGTAA
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