Ggra4319.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra4319.t1
Unique Name	Ggra4319.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	250

Homology

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BLAST of Ggra4319.t1 vs. uniprot
Match: A0A2V3IFL1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFL1_9FLOR)

HSP 1 Score: 314 bits (805), Expect = 1.360e-105
Identity = 149/229 (65.07%), Postives = 177/229 (77.29%), Query Frame = 0

Query:   20 LTAVNAEDACNISTLRVTGSNSLFALACRCGDAPEFLGRAVRFLDSHIPDSVAQEEVTVDCIEHRKPQLARACAQSSDRFERQAAHVLEECLNERPINPTREGMMPFTFNKDRCITDFRELDVERVEALLACGCPQRPGYIVNPGVIQFITSGSPLGAGVGQQVLQLCTSQALPQLNDACRNMPERFALRGAQAFNVCCKRARRLFDLDKLLCQATVPDDILQLRLSFV 248
            L   + E  C I+T RVTG N+LF+L CRCGD  E LGR++RFLD H PD++AQEE+TV CIEHRKP++A AC +S   FER AAHVL EC++ RP NP+ E  MPFTF +D C ++FRELDV+RVEALL C C QRPGYIV+PGVIQFIT+GSP GA   Q++L  CT +ALP+L D C NMPERF LR AQAFNVCCKR R LF LDKL CQATVPDD+ +L L+FV
Sbjct:   18 LVPAHGERTCRIATHRVTGKNNLFSLICRCGDGLEMLGRSIRFLDPHTPDTIAQEELTVQCIEHRKPEMAGACLKSGSEFERLAAHVLRECMDRRPENPSAEERMPFTFRRDMCESEFRELDVDRVEALLVCACTQRPGYIVHPGVIQFITTGSPNGASEEQKLLLNCTREALPRLTDTCSNMPERFDLRSAQAFNVCCKRVRVLFALDKLKCQATVPDDVTELDLTFV 246

[Close]

BLAST of Ggra4319.t1 vs. uniprot
Match: A0A2V3IF75 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF75_9FLOR)

HSP 1 Score: 231 bits (590), Expect = 3.550e-74
Identity = 110/161 (68.32%), Postives = 128/161 (79.50%), Query Frame = 0

Query:   88 LARACAQSSDRFERQAAHVLEECLNERPINPTREGMMPFTFNKDRCITDFRELDVERVEALLACGCPQRPGYIVNPGVIQFITSGSPLGAGVGQQVLQLCTSQALPQLNDACRNMPERFALRGAQAFNVCCKRARRLFDLDKLLCQATVPDDILQLRLSFV 248
            +ARAC ++   FE  AA VL EC++ RP+NP+ EG MPFTF +D C  DFRELD +R+E LLACGC QRPGYIVNPGVIQFITSGSP GA   Q++LQ CT +A+PQL++ CR MPERF LR AQAFNVCCKRAR  FD++KL CQATVPDDI QL LSFV
Sbjct:    1 MARACFRNGSEFEELAASVLHECMDRRPVNPSAEGRMPFTFRRDSCKADFRELDADRLEVLLACGCVQRPGYIVNPGVIQFITSGSPNGANEEQKMLQECTREAVPQLSETCRVMPERFDLRSAQAFNVCCKRARVQFDVEKLKCQATVPDDITQLDLSFV 161

The following BLAST results are available for this feature:

BLAST of Ggra4319.t1 vs. uniprot

BLAST of Ggra4319.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IFL1	1.360e-105	65.07	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IF75	3.550e-74	68.32	Uncharacterized protein n=2 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..249
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:621352..622101 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4319.t1	Ggra4319.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000022_pilon 621352..622101 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra4319.t1 ID=Ggra4319.t1|Name=Ggra4319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MASVANFLSLSLFAFCCALLTAVNAEDACNISTLRVTGSNSLFALACRCG
DAPEFLGRAVRFLDSHIPDSVAQEEVTVDCIEHRKPQLARACAQSSDRFE
RQAAHVLEECLNERPINPTREGMMPFTFNKDRCITDFRELDVERVEALLA
CGCPQRPGYIVNPGVIQFITSGSPLGAGVGQQVLQLCTSQALPQLNDACR
NMPERFALRGAQAFNVCCKRARRLFDLDKLLCQATVPDDILQLRLSFVE*