Ggra2887.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2887.t1
Unique NameGgra2887.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length553
Homology
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A2V3IHY1 (General transcription factor 3C polypeptide 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHY1_9FLOR)

HSP 1 Score: 299 bits (766), Expect = 1.680e-89
Identity = 211/522 (40.42%), Postives = 267/522 (51.15%), Query Frame = 0
Query:   21 ALVERLRARRLSRGALEYGTLDYAFRQYSVGHGASVRAQTELIPDRPLGLDRRSAADRIARLHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIANALLVAASA------------------TPLTRARTPPPTXXXXXXXXXXXXXXXXXXXH----VHAAHKSTLDGA-----QTPPDRDASGSHSNVGALAAAARRYNSAEGKQSELTHDNML------GHNVRPSHHMIQQTG--GAQPRAPPPATAAQHMAPTLECGQWTFRLPSSFTLSQIPHKRNNFVQLCDITLPEVVRFCERESATDRFDKRYGFFSQHAHQRLMTLIKRTLLAMCKQRLGPQRVAHIMRGDHSSLSHLVLTRKRRLYLKDVIRPRKRAVRRESAPPTHV--RTESTRAISGACQREAVAQRNLLDEHAEQQTQEEIGVEDELEEVAGFELLEDDE 505
            +L+ERLR RR +R A EYG LDY FRQYS G  + +   TELIP+RPLG DRRS  +RIA LHHRV  D   VP  P      P V R R +Y QCL L+R LF  RP+W+RRALQ+G+P  LA  FKRVIP+VAY F GTGPFYQAWIRYG+DPR+ P  R++QT+++RI N ++VAA                    T +T                                V  A +   D       +T P R   G   N     + A+   +   K  E   D  L      G     +H MI + G  G + R   P T  +            FR+P SFTLSQIP KRNNF+Q+CDI L EVV+FCE+   +DRFD R+GFF+Q  H+ LM  IK TLL M K+ LG +RV  I RGD+SS+ HL+                     R     TH+  R + T A       + V    +  E +E +  E  G E+EL EVAGF LL++DE
Sbjct:  174 SLLERLRPRRFARTAPEYGNLDYWFRQYSCGD-SKLPTTTELIPNRPLGDDRRSDVNRIALLHHRVPMDVEKVPDGPELESNAPSV-RGRCEYDQCLDLMRKLFRIRPIWVRRALQEGIPKELARHFKRVIPQVAYAFQGTGPFYQAWIRYGYDPRKDPSSRKYQTMDIRITNTIIVAARMQCEQDHDNMKDGVRSQVNTYVTETGNSVQVHESGNRSTGTRAGVESFSAREGRDVGTAKEMKQDSTGDEHIETGPVRRGVGEAMNASHTGSTAKAVGNVIAKHDERAVDGKLHTGRNDGQQGAGAHEMIARRGTNGWEGR---PHTLGEKEGDEEMKLPAPFRMPGSFTLSQIPCKRNNFIQICDIRLAEVVKFCEKVERSDRFDARFGFFTQAEHEGLMRTIKDTLLEMSKKLLGEERVRQIKRGDYSSVGHLM---------------------RRCERGTHMVSRFDGTDAAEAV---DVVKDLEVEGERSEGRGVEADG-EEELAEVAGFALLDEDE 665          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A1Y1Y9M0 (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y9M0_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-10
Identity = 50/169 (29.59%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   41 LDYAFRQYSVGHGASVRAQTELIPDRPLGLDRRSAADRIARLHHRVAADARSVPAAPXXXXLLPPVLRCRAQY-QQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIANALLVAASATPLTRAR 208
            +DY +RQ +    + V+   +   D P  +   +   R   + + +  +A+SVP+ P         ++  +Q  ++ ++ ++ALF +RP+W R ALQ+ +P       KR++P  AY  S +GP+   WIRY +DPRQH D R +Q +++R          A  L RA+
Sbjct:  190 MDYGYRQNT----SVVKVLVQKNEDEPPVVKLINRRRRRKFVAYSIDFEAKSVPSHPPED-----AVKFSSQIPEESIENIQALFEKRPMWTRSALQNNLPNSDRKIIKRLLPFAAYWMS-SGPWRDCWIRYNYDPRQHVDARFYQLLDIRYTARPRQLGRAKRLLRAK 348          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A183LN12 (Tau95 domain-containing protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183LN12_9TREM)

HSP 1 Score: 69.3 bits (168), Expect = 1.320e-9
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  120 VRALFARRPVWLRRALQDGMPAPLAT-QFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVR 190
            ++ LF  RP+WLR AL   MP       F +++P VAY +   GP+ +AWIRYG+DPRQ P+ RR+Q  + R
Sbjct:   92 IQKLFDERPIWLRPALAYHMPGDTRLIYFTQILPSVAY-YMIRGPWSRAWIRYGYDPRQDPEARRYQVADYR 162          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A5J5EWL4 (RNA polymerase III transcription factor IIIC subunit-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EWL4_9PEZI)

HSP 1 Score: 69.3 bits (168), Expect = 6.860e-9
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   92 SVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            S+   P     +PP  R  + +++C+  +RALF +RP+W RRAL +  P  L T  +  +  VAY +   GP+    + YG DPR++P  R++Q+V  +I
Sbjct:  252 SIIEIPTKPSDVPPYERLDSLHKECVDELRALFEKRPIWTRRALYNNFPKRLQTMVRFTMAHVAYMWRA-GPWRDTCVIYGVDPRRNPKYRKYQSVFFQI 350          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A317X0S0 (Uncharacterized protein n=1 Tax=Aspergillus heteromorphus CBS 117.55 TaxID=1448321 RepID=A0A317X0S0_9EURO)

HSP 1 Score: 69.3 bits (168), Expect = 1.030e-8
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   82 LHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMP-APLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            L H V+ D  ++P +P      PP+       Q+ +  V ALF++RP W RR L++ +P A      +  IP V Y F  +GP+  A I++G DPR  PD R +QT   RI
Sbjct:  242 LTHLVSYDVANIPTSPRTNC--PPIPSLDKILQETIAAVTALFSQRPAWTRRGLRNSLPTAEHRYALRHAIPYVGYIFR-SGPWRDAIIKFGHDPRTSPDYRVYQTTMFRI 349          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A2J5I7T1 (RNA polymerase III transcription factor IIIC subunit n=1 Tax=Aspergillus taichungensis TaxID=482145 RepID=A0A2J5I7T1_9EURO)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-8
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   82 LHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMP-APLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            L H V  D   VP+ P      PP+ +  A  ++ + ++  LFA+RP W RR L++ +P        +  IP V Y F  +GP+  A +R+G DPR  P  R++QT+  RI
Sbjct:  237 LTHLVPYDIDPVPSQPRESC--PPMEKLDATMRETITIISGLFAQRPAWTRRGLRNALPKVEQRYALRHAIPYVGYVFR-SGPWRDAIVRFGHDPRTDPSYRKYQTLMFRI 344          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A1L9SP82 (Uncharacterized protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SP82_9EURO)

HSP 1 Score: 67.8 bits (164), Expect = 2.990e-8
Identity = 45/111 (40.54%), Postives = 58/111 (52.25%), Query Frame = 0
Query:   82 LHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPA-PLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            L H V  D  SVP+AP      PP+       Q+ +  VRALFA R  W RR L++ +       Q +  IP VAY F  +GP+  A I++G DPR  P  R +QTV  RI
Sbjct:  244 LTHLVPYDIESVPSAPRDSC--PPLDTLDPALQETIASVRALFAERVAWTRRGLRNSLTTLEQRYQLRHAIPYVAYIFR-SGPWRDAIIKFGHDPRTAPCYRFYQTVMFRI 351          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A146FDS1 (RNA polymerase III transcription factor subunit n=22 Tax=Aspergillus TaxID=5052 RepID=A0A146FDS1_ASPKA)

HSP 1 Score: 67.8 bits (164), Expect = 3.150e-8
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 0
Query:   82 LHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPA-PLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            L H V+ D  +VP +P      PP+       Q+ +  V ALF +RP W RR L++ +P        +  IP V Y F  +GP+  A I+YG DPR  P  R +QT   RI
Sbjct:  242 LTHLVSYDIATVPTSPRTNC--PPIHTLDKTLQETITAVEALFQQRPAWTRRGLRNSLPTIEQRYALRHAIPYVGYIFR-SGPWRDAIIKYGHDPRTDPSYRIYQTAMFRI 349          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A2I2FNQ7 (RNA polymerase III transcription factor IIIC subunit-domain-containing protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2I2FNQ7_9EURO)

HSP 1 Score: 67.8 bits (164), Expect = 3.160e-8
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 0
Query:   82 LHHRVAADARSVPAAPXXXXLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMP-APLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRI 191
            L H V  D   VP+ P      PP+ +  +  ++ + ++  LFA+RP W RR L++ +P        +  IP V Y F  +GP+  A +R+G DPR  P+ R++QT+  RI
Sbjct:  253 LTHLVPYDIDPVPSQPRDSC--PPMEKLDSTMRETITIIADLFAQRPAWTRRGLRNALPKVEQRYALRHAIPYVGYVFR-SGPWRDAIVRFGHDPRTDPEYRKYQTLMFRI 360          
BLAST of Ggra2887.t1 vs. uniprot
Match: A0A813NPH4 (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813NPH4_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 0
Query:  114 QQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRVIPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIAN 193
            ++C+  +  +F  RP +L+  L      P A+  K V+P VAY F+ TGP+   W+R+G+DPR+HP+ R++Q ++ R+ N
Sbjct:  310 RECIGKLTEMFKERPCYLKSVLLCVTNYP-ASLLKEVLPYVAYYFT-TGPWRSCWVRFGYDPRKHPEARKYQMIDYRLRN 387          
The following BLAST results are available for this feature:
BLAST of Ggra2887.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHY11.680e-8940.42General transcription factor 3C polypeptide 5 n=1 ... [more]
A0A1Y1Y9M01.000e-1029.59Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A183LN121.320e-945.83Tau95 domain-containing protein n=1 Tax=Schistosom... [more]
A0A5J5EWL46.860e-935.00RNA polymerase III transcription factor IIIC subun... [more]
A0A317X0S01.030e-836.94Uncharacterized protein n=1 Tax=Aspergillus hetero... [more]
A0A2J5I7T11.250e-835.14RNA polymerase III transcription factor IIIC subun... [more]
A0A1L9SP822.990e-840.54Uncharacterized protein n=1 Tax=Penicilliopsis zon... [more]
A0A146FDS13.150e-836.94RNA polymerase III transcription factor subunit n=... [more]
A0A2I2FNQ73.160e-834.23RNA polymerase III transcription factor IIIC subun... [more]
A0A813NPH44.500e-837.50Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 518..552
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..552
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 485..552
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..311
NoneNo IPR availablePANTHERPTHR13230:SF5GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 5coord: 88..550
IPR019136Transcription factor IIIC subunit 5, HTH domainPFAMPF09734Tau95coord: 98..190
e-value: 1.6E-23
score: 84.0
IPR040454Transcription factor IIIC subunit Tfc1/Sfc1PANTHERPTHR13230GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5coord: 88..550
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 506..541

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:178810..180468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1Ggra2887.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 178810..180468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MEAVRAAAPTAAPPPPPPPHALVERLRARRLSRGALEYGTLDYAFRQYSV
GHGASVRAQTELIPDRPLGLDRRSAADRIARLHHRVAADARSVPAAPPPP
PLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRV
IPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIANALLVAAS
ATPLTRARTPPPTTPPTTPPTTPPTTPPPPPPHVHAAHKSTLDGAQTPPD
RDASGSHSNVGALAAAARRYNSAEGKQSELTHDNMLGHNVRPSHHMIQQT
GGAQPRAPPPATAAQHMAPTLECGQWTFRLPSSFTLSQIPHKRNNFVQLC
DITLPEVVRFCERESATDRFDKRYGFFSQHAHQRLMTLIKRTLLAMCKQR
LGPQRVAHIMRGDHSSLSHLVLTRKRRLYLKDVIRPRKRAVRRESAPPTH
VRTESTRAISGACQREAVAQRNLLDEHAEQQTQEEIGVEDELEEVAGFEL
LEDDEDEEDEEDEEDEEDEEDEEDEEDEEDEEDEEEEEEEEEEEEEVQEE
ER*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019136TF_IIIC_su-5_HTH
IPR040454TF_IIIC_Tfc1/Sfc1
IPR016024ARM-type_fold