Ggra2887.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2887.t1
Unique NameGgra2887.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length553
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:178810..180468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708512.1
Preferred nameGTF3C5
PFAMsTau95
Max annot lvl2759|Eukaryota
KEGG koko:K15202
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009888,GO:0009987,GO:0010467,GO:0014706,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035914,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060537,GO:0060538,GO:0061061,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Evalue1.51e-13
EggNOG OGsKOG2473@1|root,KOG2473@2759|Eukaryota
Description5S class rRNA transcription by RNA polymerase III
COG categoryS
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2887Ggra2887Gracilaria gracilis GNS1m malegenetig00000858_pilon 178810..180954 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1.stop1Ggra2887.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 178810..178812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1.CDS1Ggra2887.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 178810..180468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1.exon1Ggra2887.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 178810..180468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1.start1Ggra2887.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 180466..180468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2887.t1Ggra2887.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 178810..180468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MEAVRAAAPTAAPPPPPPPHALVERLRARRLSRGALEYGTLDYAFRQYSV
GHGASVRAQTELIPDRPLGLDRRSAADRIARLHHRVAADARSVPAAPPPP
PLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRV
IPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIANALLVAAS
ATPLTRARTPPPTTPPTTPPTTPPTTPPPPPPHVHAAHKSTLDGAQTPPD
RDASGSHSNVGALAAAARRYNSAEGKQSELTHDNMLGHNVRPSHHMIQQT
GGAQPRAPPPATAAQHMAPTLECGQWTFRLPSSFTLSQIPHKRNNFVQLC
DITLPEVVRFCERESATDRFDKRYGFFSQHAHQRLMTLIKRTLLAMCKQR
LGPQRVAHIMRGDHSSLSHLVLTRKRRLYLKDVIRPRKRAVRRESAPPTH
VRTESTRAISGACQREAVAQRNLLDEHAEQQTQEEIGVEDELEEVAGFEL
LEDDEDEEDEEDEEDEEDEEDEEDEEDEEDEEDEEEEEEEEEEEEEVQEE
ER*
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spliced messenger RNA

>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000858_pilon:178810..180468- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGGTGCGCGCGGCTGCGCCTACGGCGGCGCCACCACCGCCGCC
CCCGCCGCACGCGCTGGTGGAGCGGTTGCGGGCGCGGCGGCTGTCGCGCG
GCGCGCTGGAGTACGGCACGTTGGACTATGCGTTCCGGCAGTACTCGGTG
GGGCACGGCGCCAGTGTGCGCGCGCAGACGGAGCTGATCCCCGACCGTCC
GCTGGGGCTGGACCGGCGCTCTGCGGCGGACCGCATCGCGCGGCTGCACC
ACCGCGTGGCGGCGGACGCGCGCAGCGTGCCGGCCGCGCCGCCGCCGCCG
CCGCTGCTGCCGCCCGTGCTGCGCTGCCGCGCGCAGTACCAGCAGTGTCT
GCAGCTGGTGCGCGCGCTGTTTGCGCGCCGCCCCGTGTGGCTGCGCCGCG
CGCTGCAGGACGGCATGCCCGCGCCGCTGGCCACGCAGTTCAAGCGCGTC
ATCCCGCGCGTGGCGTACACCTTCAGCGGCACCGGCCCCTTTTACCAGGC
GTGGATCCGCTACGGCTTTGACCCGCGACAGCACCCCGACTGCCGCCGCT
TCCAGACCGTCGAGGTGCGCATTGCCAACGCGTTGCTCGTCGCCGCCAGC
GCTACGCCGCTCACGCGAGCGCGCACGCCGCCGCCCACCACGCCGCCCAC
CACGCCGCCCACCACGCCGCCCACCACGCCGCCGCCGCCGCCGCCGCACG
TGCACGCAGCTCACAAGAGCACACTCGATGGCGCGCAGACGCCACCTGAC
AGAGACGCAAGTGGTTCTCACTCAAACGTTGGCGCATTGGCGGCGGCGGC
GCGCCGTTATAACAGTGCTGAGGGTAAACAAAGTGAGCTTACGCATGACA
ACATGTTGGGACACAATGTACGCCCGTCTCATCACATGATTCAGCAAACG
GGTGGTGCGCAGCCGCGTGCGCCGCCGCCCGCCACCGCGGCGCAACACAT
GGCACCAACTCTCGAGTGCGGCCAGTGGACGTTTCGCTTGCCCAGCAGCT
TCACGCTGTCGCAAATCCCGCACAAGCGAAACAACTTTGTGCAGCTGTGT
GACATTACGCTGCCGGAGGTGGTGCGCTTCTGTGAGCGCGAAAGCGCCAC
CGACCGCTTTGACAAGCGCTACGGCTTCTTCTCGCAACACGCGCACCAGC
GTTTGATGACGCTCATCAAACGCACGCTGCTGGCCATGTGCAAGCAGCGG
CTGGGGCCGCAGCGTGTGGCGCATATCATGCGTGGCGATCACTCATCACT
CAGCCATTTGGTGCTGACCCGCAAGCGACGCCTGTACCTCAAAGATGTGA
TACGGCCGCGCAAGCGCGCCGTCAGGCGCGAGAGCGCGCCGCCGACGCAC
GTTCGCACAGAAAGCACGCGCGCGATAAGCGGCGCGTGCCAGCGTGAGGC
GGTTGCTCAGCGCAACTTGCTCGACGAGCACGCGGAGCAGCAGACGCAGG
AGGAGATAGGCGTGGAGGACGAGCTGGAGGAGGTGGCCGGCTTTGAGCTA
TTGGAGGACGACGAAGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGA
GGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACG
AGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGTACAGGAGGAA
GAGCGGTGA
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protein sequence of Ggra2887.t1

>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MEAVRAAAPTAAPPPPPPPHALVERLRARRLSRGALEYGTLDYAFRQYSV
GHGASVRAQTELIPDRPLGLDRRSAADRIARLHHRVAADARSVPAAPPPP
PLLPPVLRCRAQYQQCLQLVRALFARRPVWLRRALQDGMPAPLATQFKRV
IPRVAYTFSGTGPFYQAWIRYGFDPRQHPDCRRFQTVEVRIANALLVAAS
ATPLTRARTPPPTTPPTTPPTTPPTTPPPPPPHVHAAHKSTLDGAQTPPD
RDASGSHSNVGALAAAARRYNSAEGKQSELTHDNMLGHNVRPSHHMIQQT
GGAQPRAPPPATAAQHMAPTLECGQWTFRLPSSFTLSQIPHKRNNFVQLC
DITLPEVVRFCERESATDRFDKRYGFFSQHAHQRLMTLIKRTLLAMCKQR
LGPQRVAHIMRGDHSSLSHLVLTRKRRLYLKDVIRPRKRAVRRESAPPTH
VRTESTRAISGACQREAVAQRNLLDEHAEQQTQEEIGVEDELEEVAGFEL
LEDDEDEEDEEDEEDEEDEEDEEDEEDEEDEEDEEEEEEEEEEEEEVQEE
ER*
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mRNA from alignment at tig00000858_pilon:178810..180468-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000858_pilon:178810..180468- (Gracilaria gracilis GNS1m male)
ATGGAGGCGGTGCGCGCGGCTGCGCCTACGGCGGCGCCACCACCGCCGCC
CCCGCCGCACGCGCTGGTGGAGCGGTTGCGGGCGCGGCGGCTGTCGCGCG
GCGCGCTGGAGTACGGCACGTTGGACTATGCGTTCCGGCAGTACTCGGTG
GGGCACGGCGCCAGTGTGCGCGCGCAGACGGAGCTGATCCCCGACCGTCC
GCTGGGGCTGGACCGGCGCTCTGCGGCGGACCGCATCGCGCGGCTGCACC
ACCGCGTGGCGGCGGACGCGCGCAGCGTGCCGGCCGCGCCGCCGCCGCCG
CCGCTGCTGCCGCCCGTGCTGCGCTGCCGCGCGCAGTACCAGCAGTGTCT
GCAGCTGGTGCGCGCGCTGTTTGCGCGCCGCCCCGTGTGGCTGCGCCGCG
CGCTGCAGGACGGCATGCCCGCGCCGCTGGCCACGCAGTTCAAGCGCGTC
ATCCCGCGCGTGGCGTACACCTTCAGCGGCACCGGCCCCTTTTACCAGGC
GTGGATCCGCTACGGCTTTGACCCGCGACAGCACCCCGACTGCCGCCGCT
TCCAGACCGTCGAGGTGCGCATTGCCAACGCGTTGCTCGTCGCCGCCAGC
GCTACGCCGCTCACGCGAGCGCGCACGCCGCCGCCCACCACGCCGCCCAC
CACGCCGCCCACCACGCCGCCCACCACGCCGCCGCCGCCGCCGCCGCACG
TGCACGCAGCTCACAAGAGCACACTCGATGGCGCGCAGACGCCACCTGAC
AGAGACGCAAGTGGTTCTCACTCAAACGTTGGCGCATTGGCGGCGGCGGC
GCGCCGTTATAACAGTGCTGAGGGTAAACAAAGTGAGCTTACGCATGACA
ACATGTTGGGACACAATGTACGCCCGTCTCATCACATGATTCAGCAAACG
GGTGGTGCGCAGCCGCGTGCGCCGCCGCCCGCCACCGCGGCGCAACACAT
GGCACCAACTCTCGAGTGCGGCCAGTGGACGTTTCGCTTGCCCAGCAGCT
TCACGCTGTCGCAAATCCCGCACAAGCGAAACAACTTTGTGCAGCTGTGT
GACATTACGCTGCCGGAGGTGGTGCGCTTCTGTGAGCGCGAAAGCGCCAC
CGACCGCTTTGACAAGCGCTACGGCTTCTTCTCGCAACACGCGCACCAGC
GTTTGATGACGCTCATCAAACGCACGCTGCTGGCCATGTGCAAGCAGCGG
CTGGGGCCGCAGCGTGTGGCGCATATCATGCGTGGCGATCACTCATCACT
CAGCCATTTGGTGCTGACCCGCAAGCGACGCCTGTACCTCAAAGATGTGA
TACGGCCGCGCAAGCGCGCCGTCAGGCGCGAGAGCGCGCCGCCGACGCAC
GTTCGCACAGAAAGCACGCGCGCGATAAGCGGCGCGTGCCAGCGTGAGGC
GGTTGCTCAGCGCAACTTGCTCGACGAGCACGCGGAGCAGCAGACGCAGG
AGGAGATAGGCGTGGAGGACGAGCTGGAGGAGGTGGCCGGCTTTGAGCTA
TTGGAGGACGACGAAGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGA
GGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACG
AGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGTACAGGAGGAA
GAGCGGTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:178810..180468-

>Ggra2887.t1 ID=Ggra2887.t1|Name=Ggra2887.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000858_pilon:178810..180468- (Gracilaria gracilis GNS1m male)
ATGGAGGCGGTGCGCGCGGCTGCGCCTACGGCGGCGCCACCACCGCCGCC
CCCGCCGCACGCGCTGGTGGAGCGGTTGCGGGCGCGGCGGCTGTCGCGCG
GCGCGCTGGAGTACGGCACGTTGGACTATGCGTTCCGGCAGTACTCGGTG
GGGCACGGCGCCAGTGTGCGCGCGCAGACGGAGCTGATCCCCGACCGTCC
GCTGGGGCTGGACCGGCGCTCTGCGGCGGACCGCATCGCGCGGCTGCACC
ACCGCGTGGCGGCGGACGCGCGCAGCGTGCCGGCCGCGCCGCCGCCGCCG
CCGCTGCTGCCGCCCGTGCTGCGCTGCCGCGCGCAGTACCAGCAGTGTCT
GCAGCTGGTGCGCGCGCTGTTTGCGCGCCGCCCCGTGTGGCTGCGCCGCG
CGCTGCAGGACGGCATGCCCGCGCCGCTGGCCACGCAGTTCAAGCGCGTC
ATCCCGCGCGTGGCGTACACCTTCAGCGGCACCGGCCCCTTTTACCAGGC
GTGGATCCGCTACGGCTTTGACCCGCGACAGCACCCCGACTGCCGCCGCT
TCCAGACCGTCGAGGTGCGCATTGCCAACGCGTTGCTCGTCGCCGCCAGC
GCTACGCCGCTCACGCGAGCGCGCACGCCGCCGCCCACCACGCCGCCCAC
CACGCCGCCCACCACGCCGCCCACCACGCCGCCGCCGCCGCCGCCGCACG
TGCACGCAGCTCACAAGAGCACACTCGATGGCGCGCAGACGCCACCTGAC
AGAGACGCAAGTGGTTCTCACTCAAACGTTGGCGCATTGGCGGCGGCGGC
GCGCCGTTATAACAGTGCTGAGGGTAAACAAAGTGAGCTTACGCATGACA
ACATGTTGGGACACAATGTACGCCCGTCTCATCACATGATTCAGCAAACG
GGTGGTGCGCAGCCGCGTGCGCCGCCGCCCGCCACCGCGGCGCAACACAT
GGCACCAACTCTCGAGTGCGGCCAGTGGACGTTTCGCTTGCCCAGCAGCT
TCACGCTGTCGCAAATCCCGCACAAGCGAAACAACTTTGTGCAGCTGTGT
GACATTACGCTGCCGGAGGTGGTGCGCTTCTGTGAGCGCGAAAGCGCCAC
CGACCGCTTTGACAAGCGCTACGGCTTCTTCTCGCAACACGCGCACCAGC
GTTTGATGACGCTCATCAAACGCACGCTGCTGGCCATGTGCAAGCAGCGG
CTGGGGCCGCAGCGTGTGGCGCATATCATGCGTGGCGATCACTCATCACT
CAGCCATTTGGTGCTGACCCGCAAGCGACGCCTGTACCTCAAAGATGTGA
TACGGCCGCGCAAGCGCGCCGTCAGGCGCGAGAGCGCGCCGCCGACGCAC
GTTCGCACAGAAAGCACGCGCGCGATAAGCGGCGCGTGCCAGCGTGAGGC
GGTTGCTCAGCGCAACTTGCTCGACGAGCACGCGGAGCAGCAGACGCAGG
AGGAGATAGGCGTGGAGGACGAGCTGGAGGAGGTGGCCGGCTTTGAGCTA
TTGGAGGACGACGAAGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGA
GGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACG
AGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGTACAGGAGGAA
GAGCGGTGA
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