Ggra4178.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4178.t1
Unique NameGgra4178.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Homology
BLAST of Ggra4178.t1 vs. uniprot
Match: R7Q7Z3 (40S ribosomal protein S20 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7Q7Z3_CHOCR)

HSP 1 Score: 172 bits (436), Expect = 1.340e-53
Identity = 86/97 (88.66%), Postives = 93/97 (95.88%), Query Frame = 0
Query:   17 VTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSIDSTD 113
            +T+ +  +LEKVCTDLIRGAKDKDLRVKGPVRMPTKTL+ITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSID+ +
Sbjct:   22 LTSRNVKNLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLKITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSIDAAE 118          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A1X6PBD5 (Ribosomal_S10 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBD5_PORUM)

HSP 1 Score: 164 bits (416), Expect = 1.750e-50
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0
Query:   11 HTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            H     +++   P+LEKVC+DLIRGAKDK+L+VKGPVRMPTKTLR+TTRKSPCGEGTNTWDRFEMRIHKRLIDL SSTDIVKQITSISIEPGVIVEVSI
Sbjct:   22 HRIRITLSSRQVPALEKVCSDLIRGAKDKELKVKGPVRMPTKTLRVTTRKSPCGEGTNTWDRFEMRIHKRLIDLYSSTDIVKQITSISIEPGVIVEVSI 120          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A0D2K9P7 (40S ribosomal protein S20-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K9P7_9CHLO)

HSP 1 Score: 156 bits (395), Expect = 2.760e-47
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:   10 IHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            +H     +T+ +  +LEKVC DLIRGAKDK L+VKGPVRMPTK LRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRS  D+VKQITSISIEPGV VEV+I
Sbjct:   21 VHRIRITLTSRNVKNLEKVCADLIRGAKDKQLKVKGPVRMPTKVLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSPADVVKQITSISIEPGVEVEVTI 120          
BLAST of Ggra4178.t1 vs. uniprot
Match: I0Z204 (Ribosomal protein S1 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z204_COCSC)

HSP 1 Score: 155 bits (392), Expect = 7.190e-47
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0
Query:    3 GGLHNLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            G   ++ +H     +T+ +  +LEKVCTDLIRGAKDK L+VKGPVRMPTK L ITTRKSPCGEGTNTWDRFEMRIHKRLIDL S  D+VKQITSISIEPGV VEV+I
Sbjct:   11 GQEEDVQVHRIRITLTSRNVKNLEKVCTDLIRGAKDKQLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTI 117          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A830H9F8 (40S ribosomal protein S20 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9F8_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 2.580e-46
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:   10 IHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            +H     +T+ +  +LEKVC DLIRGAK+K L+VKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMR+HKRLIDL S  D+VKQITSISIEPGV VEV+I
Sbjct:   14 VHRIRITLTSKNVANLEKVCADLIRGAKEKRLKVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRVHKRLIDLHSPADVVKQITSISIEPGVEVEVTI 113          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A7S3UGX0 (Hypothetical protein n=2 Tax=Viridiplantae TaxID=33090 RepID=A0A7S3UGX0_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 3.020e-46
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 0
Query:    9 AIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            A+H     +T+ +  +LEKVC DLI+GAKDK LRVKGPVRMPTK L+ITTRKSPCGEGTNTWDRFEMRIHKRLIDL S +D+VKQITSISIEPGV VEV+I
Sbjct:   18 ALHRIRITLTSRNVKNLEKVCADLIKGAKDKRLRVKGPVRMPTKCLKITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSDVVKQITSISIEPGVEVEVTI 118          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A7N5JST3 (40S ribosomal protein S20 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7N5JST3_AILME)

HSP 1 Score: 153 bits (387), Expect = 3.050e-46
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 0
Query:    7 NLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            +LAIH     +T+ +  SLEKVC DLIRGAK+K+L+VKGPVRMPTKTLRITTRK+PCGEG+ TWDRF+MRIHKRLIDL S ++IVKQITSISIEPGV VEV+I
Sbjct:    5 DLAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTI 107          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A1D2AEJ9 (Ribosomal_S10 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AEJ9_AUXPR)

HSP 1 Score: 154 bits (388), Expect = 3.110e-46
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 0
Query:    6 HNLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSID 110
            H + IH     +T+ +  +LEKVCTDL+RGAK+K+L+VKGPVR+PTK LRITTRKSPCGEGT TWDRFEMRIHKRLIDL S  ++VKQITS+SIEPGV VEV+I+
Sbjct:   16 HEVPIHRIRITLTSKNVTNLEKVCTDLVRGAKEKELKVKGPVRLPTKVLRITTRKSPCGEGTKTWDRFEMRIHKRLIDLHSPVEVVKQITSVSIEPGVEVEVTIN 120          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A3B4WLA1 (40S ribosomal protein S20 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A3B4WLA1_SERLL)

HSP 1 Score: 154 bits (388), Expect = 3.210e-46
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 0
Query:   10 IHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSIDSTD 113
            +H     +T+ +  +LEKVC DLI+GAKDK L+VKGPVR+PTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDL S ++IVKQITSISIEPGV VEV+I   D
Sbjct:   20 VHRIRITLTSRNVKNLEKVCADLIKGAKDKRLKVKGPVRLPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADID 123          
BLAST of Ggra4178.t1 vs. uniprot
Match: A0A2V0P0Q5 (Ribosomal protein S1 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0Q5_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 4.870e-46
Identity = 77/100 (77.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:   10 IHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIEPGVIVEVSI 109
            +H     +T+ +  +LEKVC DLIRGAKDK L+VKGPVRMPTK LRITTRKSPCGEGTNTWDRFEMRIHKRLIDL S  D+VKQITSISIEPGV VEV+I
Sbjct:   57 VHRIRITLTSRNVKNLEKVCADLIRGAKDKQLKVKGPVRMPTKVLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPADVVKQITSISIEPGVEVEVTI 156          
The following BLAST results are available for this feature:
BLAST of Ggra4178.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q7Z31.340e-5388.6640S ribosomal protein S20 n=2 Tax=Rhodymeniophycid... [more]
A0A1X6PBD51.750e-5082.83Ribosomal_S10 domain-containing protein n=1 Tax=Po... [more]
A0A0D2K9P72.760e-4778.0040S ribosomal protein S20-1 n=1 Tax=Monoraphidium ... [more]
I0Z2047.190e-4772.90Ribosomal protein S1 n=1 Tax=Coccomyxa subellipsoi... [more]
A0A830H9F82.580e-4676.0040S ribosomal protein S20 n=1 Tax=Pycnococcus prov... [more]
A0A7S3UGX03.020e-4676.24Hypothetical protein n=2 Tax=Viridiplantae TaxID=3... [more]
A0A7N5JST33.050e-4674.7640S ribosomal protein S20 n=2 Tax=cellular organis... [more]
A0A1D2AEJ93.110e-4670.48Ribosomal_S10 domain-containing protein n=1 Tax=Au... [more]
A0A3B4WLA13.210e-4674.0440S ribosomal protein S20 n=3 Tax=Eukaryota TaxID=... [more]
A0A2V0P0Q54.870e-4677.00Ribosomal protein S1 n=1 Tax=Raphidocelis subcapit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 69..83
score: 59.62
coord: 47..62
score: 43.87
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 15..110
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 10..109
score: 16.974907
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 17..108
e-value: 2.7E-33
score: 126.6
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 18..107
e-value: 1.3E-26
score: 92.7
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 7..111
e-value: 2.3E-40
score: 139.3
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 17..108
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 18..108
e-value: 9.2E-38
score: 126.6
NoneNo IPR availablePANTHERPTHR11700:SF840S RIBOSOMAL PROTEIN S20coord: 15..110
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 36..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:514174..514872 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1Ggra4178.t1Gracilaria gracilis GNS1m malemRNAtig00000853_pilon 514174..514872 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MCGGLHNLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMP
TKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIE
PGVIVEVSIDSTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR027486Ribosomal_S10_dom
IPR036838Ribosomal_S10_dom_sf
IPR005729Ribosomal_S10_euk/arc
IPR018268Ribosomal_S10_CS