Ggra4178.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4178.t1
Unique NameGgra4178.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:514174..514872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005645730.1
Preferred nameRPS20
PFAMsRibosomal_S10
Max annot lvl3041|Chlorophyta
KEGG koko:K02969
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue1.26e-47
EggNOG OGsCOG0051@1|root,KOG0900@2759|Eukaryota,37UMJ@33090|Viridiplantae,34I3K@3041|Chlorophyta
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4178Ggra4178Gracilaria gracilis GNS1m malegenetig00000853_pilon 514174..514872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1Ggra4178.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 514174..514872 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1.start1Ggra4178.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 514174..514176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1.CDS1Ggra4178.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 514174..514218 +
Ggra4178.t1.CDS2Ggra4178.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 514457..514480 +
Ggra4178.t1.CDS3Ggra4178.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 514600..514872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1.exon1Ggra4178.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 514174..514218 +
Ggra4178.t1.exon2Ggra4178.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 514457..514480 +
Ggra4178.t1.exon3Ggra4178.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 514600..514872 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1.intron1Ggra4178.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 514219..514456 +
Ggra4178.t1.intron2Ggra4178.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 514481..514599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4178.t1.stop1Ggra4178.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 514870..514872 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=114bp
MCGGLHNLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMP
TKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIE
PGVIVEVSIDSTD*
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spliced messenger RNA

>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000853_pilon:514174..514872+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGTGGTTTGCACAACCTCGCCATCCATACGTTTTTTACGCTGGT
CACCGCTGCGGACCGCCCCTCGCTTGAGAAGGTGTGCACCGACCTCATCC
GTGGAGCAAAGGACAAGGATCTTCGTGTCAAAGGGCCGGTTCGCATGCCC
ACCAAGACTCTTCGTATCACCACTCGCAAATCGCCATGCGGTGAAGGCAC
CAATACCTGGGATCGTTTCGAAATGCGTATTCATAAGCGATTGATTGATC
TTCGTTCTTCAACCGATATTGTGAAGCAGATCACAAGTATTAGCATTGAA
CCGGGGGTTATTGTGGAGGTGTCCATTGACTCAACCGATTAA
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protein sequence of Ggra4178.t1

>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MCGGLHNLAIHTFFTLVTAADRPSLEKVCTDLIRGAKDKDLRVKGPVRMP
TKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLRSSTDIVKQITSISIE
PGVIVEVSIDSTD*
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mRNA from alignment at tig00000853_pilon:514174..514872+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000853_pilon:514174..514872+ (Gracilaria gracilis GNS1m male)
ATGTGCGGTGGTTTGCACAACCTCGCCATCCATACGTTTTTTACGGTGCG
CATTCGTCTGGTTGTCACAGAGGGCCTCCTGTTTCTCCGCTGTGCAGCAT
TCTCCCGTACATGCCCCATGGCAACCCTTCTCAATAATTCAATTGAATGA
AAATTAATTCATCGTTGCGTAATTCCCTATGTTCGCCGCCGTCGTCCCCC
CTATGATCAACAGGGTGATCGCAGCCTCCCGCCAACTCTTTTCGGTCTCC
GTCGATACTACTGCGCATCCATCGCCGTAAAAGCTGGTCACCGCTGCGGA
CCGCCCCGTAAGTCGCCAGCATCACCCACTCCACCCGTAAAGATGGCCAC
TTTGAAGAAGCCCGGCTATGAGTCTCAAGCCGAACAACAACGCATCCGCA
TCACTCTAACCTCCCGCGATGTAAAGTCGCTTGAGAAGGTGTGCACCGAC
CTCATCCGTGGAGCAAAGGACAAGGATCTTCGTGTCAAAGGGCCGGTTCG
CATGCCCACCAAGACTCTTCGTATCACCACTCGCAAATCGCCATGCGGTG
AAGGCACCAATACCTGGGATCGTTTCGAAATGCGTATTCATAAGCGATTG
ATTGATCTTCGTTCTTCAACCGATATTGTGAAGCAGATCACAAGTATTAG
CATTGAACCGGGGGTTATTGTGGAGGTGTCCATTGACTCAACCGATTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:514174..514872+

>Ggra4178.t1 ID=Ggra4178.t1|Name=Ggra4178.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=342bp|location=Sequence derived from alignment at tig00000853_pilon:514174..514872+ (Gracilaria gracilis GNS1m male)
ATGTGCGGTGGTTTGCACAACCTCGCCATCCATACGTTTTTTACGCTGGT
CACCGCTGCGGACCGCCCCTCGCTTGAGAAGGTGTGCACCGACCTCATCC
GTGGAGCAAAGGACAAGGATCTTCGTGTCAAAGGGCCGGTTCGCATGCCC
ACCAAGACTCTTCGTATCACCACTCGCAAATCGCCATGCGGTGAAGGCAC
CAATACCTGGGATCGTTTCGAAATGCGTATTCATAAGCGATTGATTGATC
TTCGTTCTTCAACCGATATTGTGAAGCAGATCACAAGTATTAGCATTGAA
CCGGGGGTTATTGTGGAGGTGTCCATTGACTCAACCGATTAA
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