Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005705352.1 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 4.48e-10 |
| EggNOG OGs | 2CTQS@1|root,2S4CA@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10195.t1.stop1 | Ggra10195.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000016_pilon 65648..65650 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10195.t1.start1 | Ggra10195.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000016_pilon 68614..68616 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10195.t1 ID=Ggra10195.t1|Name=Ggra10195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp
MSSLAFVSISAFFVSPATHQRQRAPLVLCTAKPKEPTRGKQAQSKRPGKR
RYRYWSSLSNTLSELSEYLNGSQTLPTSAELQKAGRFDLDSALRRHGWGR
ISQATGLPLASVARPRSLHLVACTPSPPLRMRPYMYWRDFEHLQDALRPH
IRNNGMPTARELIDANQSEIIRAIRIHGGWKAVAHRMGVRPSSKPDWSDL
SVVQEEVRQAMQRANASDNELPNVSIIRNFGTRGLLHAIRTHHGGVTQIV
RTMYKPKVKYQPVSRKPRGYWTKERLESEVIQCAKSLSDERTNEPLYMPT
AAQFKRIGRQRDLNSFSSQMLTCVNTDEKLGGLVSFYGIGNPFWIVFETH
PRTGALGNNLMIIPVLPFNAPVRLWNSEGQFISRSFASMGATDCYTERSP
KQASDLNGNSCTVQLQPESLSKARDELLCHLLPNPPPLTLISSSSCAECV
SHHLLFEDICRHSTVQHLKPISITLHPSPSSSPPDDINSTLHQKAGEGAQ
LFFISFANAALVHVLATSSWVSRSKKNKKVLSRISLVIAMLPEDKYSSPS
YDSWLLRMEHSERTVDASSSGEFLLPSESAAIMLYGAVCGMAAATIGSDL
KTTSGMNPFVMPRGVLAVLRRFAQAASNILNGSEHMQQLLDEEEQQVDDE
IYTLRRHALVHTLSCGCVMFPYASNPSASVPKCVPPPAIHIRILRAMKLQ
PNEAEQWWESRVDTCEVNYLRQSYLHHLRGADMTASIPAHLSYLQLFHAH
RPSNALYALLDQVSQSSPRDWELREAIEWVAKAFRASEACVKERMCRDGP
GDQHDVFERELAFQVFGRLALFRNRNEVVRKFVSRLELTAGATRRDTKGV
VEDF* back to topspliced messenger RNA >Ggra10195.t1 ID=Ggra10195.t1|Name=Ggra10195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2565bp|location=Sequence derived from alignment at tig00000016_pilon:65648..68616- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTTCACTCGCATTCGTCAGCATCTCTGCTTTCTTTGTTTCTCCTGC
TACCCATCAGAGACAAAGAGCCCCTCTCGTTCTCTGCACGGCAAAGCCCA
AGGAACCAACCAGAGGCAAGCAGGCTCAATCGAAGAGACCCGGCAAGCGA
CGATACCGTTATTGGTCCTCACTTTCGAACACTCTTTCTGAGCTTTCTGA
GTACCTTAATGGCTCACAGACGCTACCGACCTCAGCTGAGCTGCAAAAAG
CCGGTCGCTTCGATTTGGACTCTGCTCTACGACGTCACGGATGGGGTCGT
ATATCTCAGGCGACTGGACTTCCTTTAGCGTCCGTGGCGAGACCGAGATC
CCTTCATTTGGTTGCATGCACTCCATCACCTCCTCTTAGAATGCGGCCGT
ACATGTATTGGAGAGATTTCGAACATTTGCAAGATGCTCTGCGCCCTCAC
ATACGCAACAACGGTATGCCAACTGCACGCGAACTAATCGACGCCAATCA
AAGCGAAATCATAAGAGCAATTCGAATTCACGGTGGCTGGAAAGCGGTAG
CGCATCGCATGGGTGTCAGACCTTCGAGCAAGCCAGATTGGTCTGATCTA
TCAGTAGTACAAGAGGAGGTTCGCCAAGCGATGCAGCGCGCAAACGCAAG
TGATAATGAGCTTCCAAATGTGTCCATAATACGAAATTTCGGTACTCGTG
GCTTGTTACATGCCATACGAACTCATCATGGCGGTGTGACACAGATAGTT
CGTACCATGTACAAGCCCAAAGTCAAGTACCAACCTGTCTCTCGAAAACC
AAGGGGCTACTGGACCAAAGAACGACTAGAATCGGAAGTGATTCAATGCG
CTAAATCCCTCTCCGACGAACGAACGAACGAGCCTTTGTACATGCCAACA
GCTGCTCAGTTCAAAAGAATTGGTAGACAGAGAGACTTGAACAGTTTTAG
CTCTCAGATGCTCACATGTGTGAATACGGACGAAAAGCTAGGTGGCTTAG
TCTCGTTCTACGGCATCGGTAATCCATTTTGGATTGTTTTCGAGACCCAC
CCACGCACCGGAGCCCTAGGCAACAATCTGATGATCATACCTGTACTACC
GTTTAATGCCCCGGTCAGATTATGGAATTCCGAAGGACAATTCATTTCAA
GATCCTTTGCGTCTATGGGTGCTACCGACTGCTACACGGAACGCAGCCCG
AAACAAGCGTCTGATTTGAATGGAAATTCTTGCACGGTACAGCTTCAGCC
TGAAAGTTTGAGCAAAGCTCGAGATGAGCTTCTGTGCCATTTGCTTCCGA
ATCCCCCGCCACTCACACTAATATCTTCATCAAGTTGTGCGGAATGCGTT
TCACACCACCTTCTTTTCGAGGACATCTGTCGACATTCTACCGTTCAGCA
TCTCAAACCAATCTCCATTACGCTCCATCCGTCACCTTCTTCGTCACCCC
CAGATGACATTAATAGTACTCTGCACCAAAAGGCTGGAGAAGGAGCACAG
CTTTTCTTTATTTCGTTTGCTAATGCGGCCTTAGTCCACGTCCTAGCGAC
CTCCTCATGGGTATCACGGTCGAAGAAGAACAAGAAGGTTCTATCCAGAA
TATCTCTTGTGATAGCAATGCTGCCAGAAGATAAATACAGTTCGCCGTCG
TACGACTCTTGGCTCCTCCGGATGGAGCATTCTGAACGTACAGTGGACGC
ATCCAGTTCTGGCGAATTCCTCCTGCCCAGCGAATCCGCAGCAATAATGC
TTTACGGTGCTGTGTGCGGGATGGCCGCGGCGACGATCGGAAGCGATTTG
AAGACCACTTCCGGAATGAATCCATTTGTGATGCCCAGGGGAGTGTTGGC
AGTATTGCGTCGTTTTGCGCAAGCTGCGTCGAACATTCTGAACGGAAGTG
AACACATGCAACAGCTTCTAGACGAAGAAGAACAGCAAGTGGATGATGAA
ATCTATACTTTGCGCCGACACGCCCTAGTGCACACTTTGTCCTGTGGCTG
CGTAATGTTTCCATATGCTAGTAATCCGTCTGCCTCAGTGCCAAAATGTG
TACCACCCCCAGCAATTCATATTCGTATTCTTCGAGCAATGAAACTGCAG
CCAAACGAAGCTGAGCAATGGTGGGAATCTCGCGTAGACACATGTGAAGT
GAATTATCTTCGCCAAAGCTACCTGCATCATCTTCGTGGAGCCGACATGA
CTGCATCGATACCAGCACATCTGAGTTATCTGCAGCTGTTTCATGCTCAC
AGGCCTAGTAATGCACTGTATGCCCTTCTTGACCAAGTAAGTCAATCGTC
CCCAAGGGATTGGGAGCTAAGGGAGGCCATTGAATGGGTAGCAAAGGCAT
TCCGAGCATCAGAGGCTTGCGTAAAAGAACGCATGTGTAGAGACGGGCCT
GGTGATCAACACGATGTTTTCGAGCGGGAATTGGCTTTCCAAGTGTTCGG
AAGATTAGCATTGTTTAGAAATAGGAATGAAGTGGTGAGGAAATTCGTCT
CGAGACTTGAACTTACAGCCGGCGCGACAAGGAGGGATACCAAGGGAGTC
GTGGAGGATTTCTGA back to topprotein sequence of Ggra10195.t1 >Ggra10195.t1 ID=Ggra10195.t1|Name=Ggra10195.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=855bp
MSSLAFVSISAFFVSPATHQRQRAPLVLCTAKPKEPTRGKQAQSKRPGKR
RYRYWSSLSNTLSELSEYLNGSQTLPTSAELQKAGRFDLDSALRRHGWGR
ISQATGLPLASVARPRSLHLVACTPSPPLRMRPYMYWRDFEHLQDALRPH
IRNNGMPTARELIDANQSEIIRAIRIHGGWKAVAHRMGVRPSSKPDWSDL
SVVQEEVRQAMQRANASDNELPNVSIIRNFGTRGLLHAIRTHHGGVTQIV
RTMYKPKVKYQPVSRKPRGYWTKERLESEVIQCAKSLSDERTNEPLYMPT
AAQFKRIGRQRDLNSFSSQMLTCVNTDEKLGGLVSFYGIGNPFWIVFETH
PRTGALGNNLMIIPVLPFNAPVRLWNSEGQFISRSFASMGATDCYTERSP
KQASDLNGNSCTVQLQPESLSKARDELLCHLLPNPPPLTLISSSSCAECV
SHHLLFEDICRHSTVQHLKPISITLHPSPSSSPPDDINSTLHQKAGEGAQ
LFFISFANAALVHVLATSSWVSRSKKNKKVLSRISLVIAMLPEDKYSSPS
YDSWLLRMEHSERTVDASSSGEFLLPSESAAIMLYGAVCGMAAATIGSDL
KTTSGMNPFVMPRGVLAVLRRFAQAASNILNGSEHMQQLLDEEEQQVDDE
IYTLRRHALVHTLSCGCVMFPYASNPSASVPKCVPPPAIHIRILRAMKLQ
PNEAEQWWESRVDTCEVNYLRQSYLHHLRGADMTASIPAHLSYLQLFHAH
RPSNALYALLDQVSQSSPRDWELREAIEWVAKAFRASEACVKERMCRDGP
GDQHDVFERELAFQVFGRLALFRNRNEVVRKFVSRLELTAGATRRDTKGV
VEDF* back to topmRNA from alignment at tig00000016_pilon:65648..68616- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10195.t1 ID=Ggra10195.t1|Name=Ggra10195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2969bp|location=Sequence derived from alignment at tig00000016_pilon:65648..68616- (Gracilaria gracilis GNS1m male)
ATGTCTTCACTCGCATTCGTCAGCATCTCTGCTTTCTTTGTTTCTCCTGC
TACCCATCAGAGACAAAGAGCCCCTCTCGTTCTCTGCACGGCAAAGCCCA
AGGAACCAACCAGAGGCAAGCAGGCTCAATCGAAGAGACCCGGCAAGCGA
CGATACCGTTATTGGTCCTCACTTTCGAACACTCTTTCTGAGCTTTCTGA
GTACCTTAATGGCTCACAGACGCTACCGACCTCAGCTGAGCTGCAAAAAG
CCGGTCGCTTCGATTTGGACTCTGCTCTACGACGTCACGGATGGGGTCGT
ATATCTCAGGCGACTGGACTTCCTTTAGCGTCCGTGGCGAGACCGAGATC
CCTTCATTTGGTTGCATGCACTCCATCACCTCCTCTTAGAATGCGGCCGT
ACATGTATTGGAGAGATTTCGAACATTTGCAAGATGCTCTGCGCCCTCAC
ATACGCAACAACGGTATGCCAACTGCACGCGAACTAATCGACGCCAATCA
AAGCGAAATCATAAGAGCAATTCGAATTCACGGTGGCTGGAAAGCGGTAG
CGCATCGCATGGGTGTCAGACCTTCGAGCAAGCCAGATTGGTCTGATCTA
TCAGTAGTACAAGAGGAGGTTCGCCAAGCGATGCAGCGCGCAAACGCAAG
TGATAATGAGCTTCCAAATGTGTCCATAATACGAAATTTCGGTACTCGTG
GCTTGTTACATGCCATACGAACTCATCATGGCGGTGTGACACAGATAGTT
CGTACCATGTACAAGCCCAAAGTCAAGTACCAACCTGTCTCTCGAAAACC
AAGGGGCTACTGGACCAAAGAACGACTAGAATCGGAAGTGATTCAATGCG
CTAAATCCCTCTCCGACGAACGAACGAACGAGCCTTTGTACATGCCAACA
GCTGCTCAGTTCAAAAGAATTGGTAGGTCTGACGTTCTGAGCGCAATTGA
CAGAGCAGGAGGCGTTCGAAGAGTTGCAGAAGCCTGTGGGTTGCGCTCTA
AACGTAAAGTTCGGTCGCAAGCGTCAGACAGAGAGACTTGAACAGTTTTA
GCTCTCAGATGCTCACATGTGTGAATACGGACGAAAAGCTAGGTGGCTTA
GTCTCGTTCTACGGCATCGGTAATCCATTTTGGATTGTTTTCGAGACCCA
CCCACGCACCGGAGCCCTAGGCAACAATCTGATGATCATACCTGTACTAC
CGTTTAATGCCCCGGTCAGATTATGGAATTCCGAAGGACAGTAAGTTACA
AGAAGTACCGTTGGTACCGTGCCGCAGCAAGTGCAAACTGCTTCCCCTAA
GATATCATAATAGATTATATGCTGTAACCTCTCAAGAAATGTGGTACGTG
AGCCCTTGGAAGGGGCAGGAGGGCTCAAGAGAACAGCTAATGATTGTCGA
TGGTCTTCATCGGGCCAATCATTCTAGTCACCGTTGTGGGCGTAGGAAAG
AACAAGAGTTGGAGCACTTGACTCCCATTGTGTGCAACTGACTGTCGTCG
ACGTGAGTTTTCTAGGCACCGTCATCTCCCGCGTGTCTCCAAGATTCATT
TCAAGATCCTTTGCGTCTATGGGTGCTACCGACTGCTACACGGAACGCAG
CCCGAAACAAGCGTCTGATTTGAATGGAAATTCTTGCACGGTACAGCTTC
AGCCTGAAAGTTTGAGCAAAGCTCGAGATGAGCTTCTGTGCCATTTGCTT
CCGAATCCCCCGCCACTCACACTAATATCTTCATCAAGTTGTGCGGAATG
CGTTTCACACCACCTTCTTTTCGAGGACATCTGTCGACATTCTACCGTTC
AGCATCTCAAACCAATCTCCATTACGCTCCATCCGTCACCTTCTTCGTCA
CCCCCAGATGACATTAATAGTACTCTGCACCAAAAGGCTGGAGAAGGAGC
ACAGCTTTTCTTTATTTCGTTTGCTAATGCGGCCTTAGTCCACGTCCTAG
CGACCTCCTCATGGGTATCACGGTCGAAGAAGAACAAGAAGGTTCTATCC
AGAATATCTCTTGTGATAGCAATGCTGCCAGAAGATAAATACAGTTCGCC
GTCGTACGACTCTTGGCTCCTCCGGATGGAGCATTCTGAACGTACAGTGG
ACGCATCCAGTTCTGGCGAATTCCTCCTGCCCAGCGAATCCGCAGCAATA
ATGCTTTACGGTGCTGTGTGCGGGATGGCCGCGGCGACGATCGGAAGCGA
TTTGAAGACCACTTCCGGAATGAATCCATTTGTGATGCCCAGGGGAGTGT
TGGCAGTATTGCGTCGTTTTGCGCAAGCTGCGTCGAACATTCTGAACGGA
AGTGAACACATGCAACAGCTTCTAGACGAAGAAGAACAGCAAGTGGATGA
TGAAATCTATACTTTGCGCCGACACGCCCTAGTGCACACTTTGTCCTGTG
GCTGCGTAATGTTTCCATATGCTAGTAATCCGTCTGCCTCAGTGCCAAAA
TGTGTACCACCCCCAGCAATTCATATTCGTATTCTTCGAGCAATGAAACT
GCAGCCAAACGAAGCTGAGCAATGGTGGGAATCTCGCGTAGACACATGTG
AAGTGAATTATCTTCGCCAAAGCTACCTGCATCATCTTCGTGGAGCCGAC
ATGACTGCATCGATACCAGCACATCTGAGTTATCTGCAGCTGTTTCATGC
TCACAGGCCTAGTAATGCACTGTATGCCCTTCTTGACCAAGTAAGTCAAT
CGTCCCCAAGGGATTGGGAGCTAAGGGAGGCCATTGAATGGGTAGCAAAG
GCATTCCGAGCATCAGAGGCTTGCGTAAAAGAACGCATGTGTAGAGACGG
GCCTGGTGATCAACACGATGTTTTCGAGCGGGAATTGGCTTTCCAAGTGT
TCGGAAGATTAGCATTGTTTAGAAATAGGAATGAAGTGGTGAGGAAATTC
GTCTCGAGACTTGAACTTACAGCCGGCGCGACAAGGAGGGATACCAAGGG
AGTCGTGGAGGATTTCTGA back to topCoding sequence (CDS) from alignment at tig00000016_pilon:65648..68616- >Ggra10195.t1 ID=Ggra10195.t1|Name=Ggra10195.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2565bp|location=Sequence derived from alignment at tig00000016_pilon:65648..68616- (Gracilaria gracilis GNS1m male)
ATGTCTTCACTCGCATTCGTCAGCATCTCTGCTTTCTTTGTTTCTCCTGC
TACCCATCAGAGACAAAGAGCCCCTCTCGTTCTCTGCACGGCAAAGCCCA
AGGAACCAACCAGAGGCAAGCAGGCTCAATCGAAGAGACCCGGCAAGCGA
CGATACCGTTATTGGTCCTCACTTTCGAACACTCTTTCTGAGCTTTCTGA
GTACCTTAATGGCTCACAGACGCTACCGACCTCAGCTGAGCTGCAAAAAG
CCGGTCGCTTCGATTTGGACTCTGCTCTACGACGTCACGGATGGGGTCGT
ATATCTCAGGCGACTGGACTTCCTTTAGCGTCCGTGGCGAGACCGAGATC
CCTTCATTTGGTTGCATGCACTCCATCACCTCCTCTTAGAATGCGGCCGT
ACATGTATTGGAGAGATTTCGAACATTTGCAAGATGCTCTGCGCCCTCAC
ATACGCAACAACGGTATGCCAACTGCACGCGAACTAATCGACGCCAATCA
AAGCGAAATCATAAGAGCAATTCGAATTCACGGTGGCTGGAAAGCGGTAG
CGCATCGCATGGGTGTCAGACCTTCGAGCAAGCCAGATTGGTCTGATCTA
TCAGTAGTACAAGAGGAGGTTCGCCAAGCGATGCAGCGCGCAAACGCAAG
TGATAATGAGCTTCCAAATGTGTCCATAATACGAAATTTCGGTACTCGTG
GCTTGTTACATGCCATACGAACTCATCATGGCGGTGTGACACAGATAGTT
CGTACCATGTACAAGCCCAAAGTCAAGTACCAACCTGTCTCTCGAAAACC
AAGGGGCTACTGGACCAAAGAACGACTAGAATCGGAAGTGATTCAATGCG
CTAAATCCCTCTCCGACGAACGAACGAACGAGCCTTTGTACATGCCAACA
GCTGCTCAGTTCAAAAGAATTGGTAGACAGAGAGACTTGAACAGTTTTAG
CTCTCAGATGCTCACATGTGTGAATACGGACGAAAAGCTAGGTGGCTTAG
TCTCGTTCTACGGCATCGGTAATCCATTTTGGATTGTTTTCGAGACCCAC
CCACGCACCGGAGCCCTAGGCAACAATCTGATGATCATACCTGTACTACC
GTTTAATGCCCCGGTCAGATTATGGAATTCCGAAGGACAATTCATTTCAA
GATCCTTTGCGTCTATGGGTGCTACCGACTGCTACACGGAACGCAGCCCG
AAACAAGCGTCTGATTTGAATGGAAATTCTTGCACGGTACAGCTTCAGCC
TGAAAGTTTGAGCAAAGCTCGAGATGAGCTTCTGTGCCATTTGCTTCCGA
ATCCCCCGCCACTCACACTAATATCTTCATCAAGTTGTGCGGAATGCGTT
TCACACCACCTTCTTTTCGAGGACATCTGTCGACATTCTACCGTTCAGCA
TCTCAAACCAATCTCCATTACGCTCCATCCGTCACCTTCTTCGTCACCCC
CAGATGACATTAATAGTACTCTGCACCAAAAGGCTGGAGAAGGAGCACAG
CTTTTCTTTATTTCGTTTGCTAATGCGGCCTTAGTCCACGTCCTAGCGAC
CTCCTCATGGGTATCACGGTCGAAGAAGAACAAGAAGGTTCTATCCAGAA
TATCTCTTGTGATAGCAATGCTGCCAGAAGATAAATACAGTTCGCCGTCG
TACGACTCTTGGCTCCTCCGGATGGAGCATTCTGAACGTACAGTGGACGC
ATCCAGTTCTGGCGAATTCCTCCTGCCCAGCGAATCCGCAGCAATAATGC
TTTACGGTGCTGTGTGCGGGATGGCCGCGGCGACGATCGGAAGCGATTTG
AAGACCACTTCCGGAATGAATCCATTTGTGATGCCCAGGGGAGTGTTGGC
AGTATTGCGTCGTTTTGCGCAAGCTGCGTCGAACATTCTGAACGGAAGTG
AACACATGCAACAGCTTCTAGACGAAGAAGAACAGCAAGTGGATGATGAA
ATCTATACTTTGCGCCGACACGCCCTAGTGCACACTTTGTCCTGTGGCTG
CGTAATGTTTCCATATGCTAGTAATCCGTCTGCCTCAGTGCCAAAATGTG
TACCACCCCCAGCAATTCATATTCGTATTCTTCGAGCAATGAAACTGCAG
CCAAACGAAGCTGAGCAATGGTGGGAATCTCGCGTAGACACATGTGAAGT
GAATTATCTTCGCCAAAGCTACCTGCATCATCTTCGTGGAGCCGACATGA
CTGCATCGATACCAGCACATCTGAGTTATCTGCAGCTGTTTCATGCTCAC
AGGCCTAGTAATGCACTGTATGCCCTTCTTGACCAAGTAAGTCAATCGTC
CCCAAGGGATTGGGAGCTAAGGGAGGCCATTGAATGGGTAGCAAAGGCAT
TCCGAGCATCAGAGGCTTGCGTAAAAGAACGCATGTGTAGAGACGGGCCT
GGTGATCAACACGATGTTTTCGAGCGGGAATTGGCTTTCCAAGTGTTCGG
AAGATTAGCATTGTTTAGAAATAGGAATGAAGTGGTGAGGAAATTCGTCT
CGAGACTTGAACTTACAGCCGGCGCGACAAGGAGGGATACCAAGGGAGTC
GTGGAGGATTTCTGA back to top
|