Ggra4155.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4155.t1
Unique Name	Ggra4155.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:414683..416344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4155	Ggra4155	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 414683..416344 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4155.t1.start1	Ggra4155.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 414683..414685 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4155.t1.CDS1	Ggra4155.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 414683..416344 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4155.t1.exon1	Ggra4155.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 414683..416344 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4155.t1.stop1	Ggra4155.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 416342..416344 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4155.t1	Ggra4155.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 414683..416344 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:414683..416344+
coding sequence from alignment at tig00000853_pilon:414683..416344+

mRNA sequence

>Ggra4155.t1 ID=Ggra4155.t1|Name=Ggra4155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MATAAEISPLLPANSQAVNCGSDSKRPSKQILFDEPQIAKCPRLKECMQN
LLSPSGLGHPIHHHLQSPSLLFQIERSLEKGLSFLVDKVRLLRLFPKNDE
EKHQVDPTRVFVHITFGLAILTMLAMTTVSPTVVLYMNHVNFTSSTNITP
YVVASALSSAVPIASNVIFGRVASSIGPANALAIIAFTAAVGIGLVLAVR
STLLVFFIGYALYAASNSMRIIRLSILSQIVPENKRTTVLATHALMTPVG
ALLGPITWIALSRYQGSLQYGQFVIDRFSLAYFLAFAILVSIGLLAAVAL
RKLPTTEGHQSTQSYDEPTEVLVHQPDGSDIIVSINEFRARVFGYFCAIM
LCVNMSSGIYMTAFQPILVNEFQVTDAKLGLVFEIIAVFAIVPPLLVAFL
SRYVMDRHIMVIGLGSKLIGMILFLPIFGPVREWQVIIGFMLIIKASIFF
STASMSLFTKVLGSLSNSALIGLLASGSSVGPAVAQLLVSDHIVQFFGGY
KFALFSLPAIIGMLMILYPHFWERLNPNCPFVRQIAQQLIAARTRFEKSG
NEA*

spliced messenger RNA

>Ggra4155.t1 ID=Ggra4155.t1|Name=Ggra4155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000853_pilon:414683..416344+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACGGCCGCAGAAATCTCCCCACTGCTGCCAGCGAATTCACAAGC
AGTCAACTGTGGCAGCGATAGCAAACGACCCAGCAAGCAAATTCTCTTTG
ATGAACCGCAAATTGCAAAATGCCCACGTCTCAAGGAATGTATGCAGAAC
CTTTTGTCACCAAGTGGACTGGGTCATCCGATACATCATCATCTTCAATC
GCCATCCTTACTTTTTCAAATAGAACGTTCTTTGGAAAAGGGTCTCTCGT
TCCTTGTTGACAAAGTCCGATTGTTACGGTTGTTTCCGAAGAACGATGAG
GAAAAGCATCAGGTCGATCCAACTCGGGTGTTTGTCCACATCACTTTCGG
TCTTGCAATTCTAACAATGCTCGCGATGACAACCGTGAGTCCTACAGTAG
TACTCTACATGAATCACGTGAACTTCACGTCTTCGACCAATATCACCCCG
TACGTTGTGGCATCTGCTCTTTCTTCAGCAGTTCCAATTGCATCCAATGT
CATATTCGGTCGAGTCGCATCATCCATAGGTCCAGCAAATGCTCTTGCTA
TAATTGCCTTTACGGCTGCTGTAGGAATCGGTCTTGTTCTCGCTGTTCGT
TCAACTCTATTGGTTTTCTTCATTGGCTACGCTCTGTACGCCGCCTCCAA
TTCAATGCGTATTATCCGTCTTTCGATACTATCTCAGATCGTACCGGAGA
ATAAGCGCACGACTGTTCTTGCTACACATGCTCTGATGACTCCAGTTGGG
GCGCTTTTGGGACCCATTACGTGGATTGCATTGTCGAGATATCAGGGTTC
ATTGCAGTATGGCCAGTTTGTTATCGATAGGTTTTCACTTGCCTACTTCC
TTGCATTTGCTATTTTGGTATCCATTGGATTGTTGGCAGCAGTTGCCCTT
CGGAAACTACCAACAACAGAAGGGCATCAATCTACCCAGAGCTATGATGA
ACCGACAGAAGTGTTGGTTCATCAACCAGATGGGTCGGATATCATTGTTT
CTATTAATGAATTTCGCGCACGGGTATTTGGGTACTTCTGCGCGATTATG
CTCTGTGTGAACATGAGCTCTGGTATTTACATGACGGCTTTCCAGCCTAT
TCTAGTTAACGAGTTTCAGGTCACTGACGCAAAACTTGGCCTCGTTTTCG
AAATCATTGCTGTTTTCGCTATCGTTCCACCATTGCTCGTGGCGTTTTTA
TCTCGGTATGTGATGGATCGCCACATAATGGTGATTGGTTTGGGATCAAA
GCTTATTGGTATGATTCTGTTTCTGCCCATATTCGGGCCTGTTCGTGAAT
GGCAAGTTATTATTGGTTTTATGCTTATCATCAAGGCCTCGATATTCTTT
TCCACAGCATCAATGAGTCTCTTCACAAAGGTTTTGGGAAGTCTTAGCAA
TAGCGCACTGATTGGTCTTCTAGCGAGCGGGAGCAGTGTCGGACCGGCCG
TTGCTCAATTGCTTGTTAGCGACCATATCGTGCAGTTTTTCGGCGGCTAT
AAGTTTGCGCTGTTTTCTCTTCCCGCAATCATTGGAATGCTAATGATTTT
GTACCCGCATTTCTGGGAGCGACTAAATCCGAACTGCCCCTTTGTCAGAC
AGATTGCGCAACAACTCATAGCCGCTCGTACCCGGTTTGAAAAGAGTGGC
AATGAAGCCTAG

protein sequence of Ggra4155.t1

>Ggra4155.t1 ID=Ggra4155.t1|Name=Ggra4155.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MATAAEISPLLPANSQAVNCGSDSKRPSKQILFDEPQIAKCPRLKECMQN
LLSPSGLGHPIHHHLQSPSLLFQIERSLEKGLSFLVDKVRLLRLFPKNDE
EKHQVDPTRVFVHITFGLAILTMLAMTTVSPTVVLYMNHVNFTSSTNITP
YVVASALSSAVPIASNVIFGRVASSIGPANALAIIAFTAAVGIGLVLAVR
STLLVFFIGYALYAASNSMRIIRLSILSQIVPENKRTTVLATHALMTPVG
ALLGPITWIALSRYQGSLQYGQFVIDRFSLAYFLAFAILVSIGLLAAVAL
RKLPTTEGHQSTQSYDEPTEVLVHQPDGSDIIVSINEFRARVFGYFCAIM
LCVNMSSGIYMTAFQPILVNEFQVTDAKLGLVFEIIAVFAIVPPLLVAFL
SRYVMDRHIMVIGLGSKLIGMILFLPIFGPVREWQVIIGFMLIIKASIFF
STASMSLFTKVLGSLSNSALIGLLASGSSVGPAVAQLLVSDHIVQFFGGY
KFALFSLPAIIGMLMILYPHFWERLNPNCPFVRQIAQQLIAARTRFEKSG
NEA*

mRNA from alignment at tig00000853_pilon:414683..416344+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4155.t1 ID=Ggra4155.t1|Name=Ggra4155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000853_pilon:414683..416344+ (Gracilaria gracilis GNS1m male)
ATGGCAACGGCCGCAGAAATCTCCCCACTGCTGCCAGCGAATTCACAAGC
AGTCAACTGTGGCAGCGATAGCAAACGACCCAGCAAGCAAATTCTCTTTG
ATGAACCGCAAATTGCAAAATGCCCACGTCTCAAGGAATGTATGCAGAAC
CTTTTGTCACCAAGTGGACTGGGTCATCCGATACATCATCATCTTCAATC
GCCATCCTTACTTTTTCAAATAGAACGTTCTTTGGAAAAGGGTCTCTCGT
TCCTTGTTGACAAAGTCCGATTGTTACGGTTGTTTCCGAAGAACGATGAG
GAAAAGCATCAGGTCGATCCAACTCGGGTGTTTGTCCACATCACTTTCGG
TCTTGCAATTCTAACAATGCTCGCGATGACAACCGTGAGTCCTACAGTAG
TACTCTACATGAATCACGTGAACTTCACGTCTTCGACCAATATCACCCCG
TACGTTGTGGCATCTGCTCTTTCTTCAGCAGTTCCAATTGCATCCAATGT
CATATTCGGTCGAGTCGCATCATCCATAGGTCCAGCAAATGCTCTTGCTA
TAATTGCCTTTACGGCTGCTGTAGGAATCGGTCTTGTTCTCGCTGTTCGT
TCAACTCTATTGGTTTTCTTCATTGGCTACGCTCTGTACGCCGCCTCCAA
TTCAATGCGTATTATCCGTCTTTCGATACTATCTCAGATCGTACCGGAGA
ATAAGCGCACGACTGTTCTTGCTACACATGCTCTGATGACTCCAGTTGGG
GCGCTTTTGGGACCCATTACGTGGATTGCATTGTCGAGATATCAGGGTTC
ATTGCAGTATGGCCAGTTTGTTATCGATAGGTTTTCACTTGCCTACTTCC
TTGCATTTGCTATTTTGGTATCCATTGGATTGTTGGCAGCAGTTGCCCTT
CGGAAACTACCAACAACAGAAGGGCATCAATCTACCCAGAGCTATGATGA
ACCGACAGAAGTGTTGGTTCATCAACCAGATGGGTCGGATATCATTGTTT
CTATTAATGAATTTCGCGCACGGGTATTTGGGTACTTCTGCGCGATTATG
CTCTGTGTGAACATGAGCTCTGGTATTTACATGACGGCTTTCCAGCCTAT
TCTAGTTAACGAGTTTCAGGTCACTGACGCAAAACTTGGCCTCGTTTTCG
AAATCATTGCTGTTTTCGCTATCGTTCCACCATTGCTCGTGGCGTTTTTA
TCTCGGTATGTGATGGATCGCCACATAATGGTGATTGGTTTGGGATCAAA
GCTTATTGGTATGATTCTGTTTCTGCCCATATTCGGGCCTGTTCGTGAAT
GGCAAGTTATTATTGGTTTTATGCTTATCATCAAGGCCTCGATATTCTTT
TCCACAGCATCAATGAGTCTCTTCACAAAGGTTTTGGGAAGTCTTAGCAA
TAGCGCACTGATTGGTCTTCTAGCGAGCGGGAGCAGTGTCGGACCGGCCG
TTGCTCAATTGCTTGTTAGCGACCATATCGTGCAGTTTTTCGGCGGCTAT
AAGTTTGCGCTGTTTTCTCTTCCCGCAATCATTGGAATGCTAATGATTTT
GTACCCGCATTTCTGGGAGCGACTAAATCCGAACTGCCCCTTTGTCAGAC
AGATTGCGCAACAACTCATAGCCGCTCGTACCCGGTTTGAAAAGAGTGGC
AATGAAGCCTAG

Coding sequence (CDS) from alignment at tig00000853_pilon:414683..416344+

>Ggra4155.t1 ID=Ggra4155.t1|Name=Ggra4155.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000853_pilon:414683..416344+ (Gracilaria gracilis GNS1m male)
ATGGCAACGGCCGCAGAAATCTCCCCACTGCTGCCAGCGAATTCACAAGC
AGTCAACTGTGGCAGCGATAGCAAACGACCCAGCAAGCAAATTCTCTTTG
ATGAACCGCAAATTGCAAAATGCCCACGTCTCAAGGAATGTATGCAGAAC
CTTTTGTCACCAAGTGGACTGGGTCATCCGATACATCATCATCTTCAATC
GCCATCCTTACTTTTTCAAATAGAACGTTCTTTGGAAAAGGGTCTCTCGT
TCCTTGTTGACAAAGTCCGATTGTTACGGTTGTTTCCGAAGAACGATGAG
GAAAAGCATCAGGTCGATCCAACTCGGGTGTTTGTCCACATCACTTTCGG
TCTTGCAATTCTAACAATGCTCGCGATGACAACCGTGAGTCCTACAGTAG
TACTCTACATGAATCACGTGAACTTCACGTCTTCGACCAATATCACCCCG
TACGTTGTGGCATCTGCTCTTTCTTCAGCAGTTCCAATTGCATCCAATGT
CATATTCGGTCGAGTCGCATCATCCATAGGTCCAGCAAATGCTCTTGCTA
TAATTGCCTTTACGGCTGCTGTAGGAATCGGTCTTGTTCTCGCTGTTCGT
TCAACTCTATTGGTTTTCTTCATTGGCTACGCTCTGTACGCCGCCTCCAA
TTCAATGCGTATTATCCGTCTTTCGATACTATCTCAGATCGTACCGGAGA
ATAAGCGCACGACTGTTCTTGCTACACATGCTCTGATGACTCCAGTTGGG
GCGCTTTTGGGACCCATTACGTGGATTGCATTGTCGAGATATCAGGGTTC
ATTGCAGTATGGCCAGTTTGTTATCGATAGGTTTTCACTTGCCTACTTCC
TTGCATTTGCTATTTTGGTATCCATTGGATTGTTGGCAGCAGTTGCCCTT
CGGAAACTACCAACAACAGAAGGGCATCAATCTACCCAGAGCTATGATGA
ACCGACAGAAGTGTTGGTTCATCAACCAGATGGGTCGGATATCATTGTTT
CTATTAATGAATTTCGCGCACGGGTATTTGGGTACTTCTGCGCGATTATG
CTCTGTGTGAACATGAGCTCTGGTATTTACATGACGGCTTTCCAGCCTAT
TCTAGTTAACGAGTTTCAGGTCACTGACGCAAAACTTGGCCTCGTTTTCG
AAATCATTGCTGTTTTCGCTATCGTTCCACCATTGCTCGTGGCGTTTTTA
TCTCGGTATGTGATGGATCGCCACATAATGGTGATTGGTTTGGGATCAAA
GCTTATTGGTATGATTCTGTTTCTGCCCATATTCGGGCCTGTTCGTGAAT
GGCAAGTTATTATTGGTTTTATGCTTATCATCAAGGCCTCGATATTCTTT
TCCACAGCATCAATGAGTCTCTTCACAAAGGTTTTGGGAAGTCTTAGCAA
TAGCGCACTGATTGGTCTTCTAGCGAGCGGGAGCAGTGTCGGACCGGCCG
TTGCTCAATTGCTTGTTAGCGACCATATCGTGCAGTTTTTCGGCGGCTAT
AAGTTTGCGCTGTTTTCTCTTCCCGCAATCATTGGAATGCTAATGATTTT
GTACCCGCATTTCTGGGAGCGACTAAATCCGAACTGCCCCTTTGTCAGAC
AGATTGCGCAACAACTCATAGCCGCTCGTACCCGGTTTGAAAAGAGTGGC
AATGAAGCCTAG