Ggra4062.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4062.t1
Unique NameGgra4062.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Homology
BLAST of Ggra4062.t1 vs. uniprot
Match: A0A2V3J1A0 (Rhomboid domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1A0_9FLOR)

HSP 1 Score: 330 bits (847), Expect = 1.730e-108
Identity = 182/355 (51.27%), Postives = 235/355 (66.20%), Query Frame = 0
Query:    2 RTGIHRFCLSLAAGCRMLRTDWHSSITFHFDRRFCDLNKPFLVAALVNTTHRYAQSHFEEDSAGSSVEGTRFELKIIAENDCNGDMEDEVEVNELLPEERERGLWKDIRVFEEDTEFGAKVLAYGISTINVAVYVTYMLGRCMMRAPTLNHSLMNFLLRHFVLSLGRVRNGRWYVLVTFNFCHYALWHLVGNSLATIVGIDLCSSFLNVGQIGALFIGGDVIGGAVSILLSSYLRAARYRTILVGSSGGIFALFNFYACARRRDSSLSPLDAVDALNIFVILRELSGLALYVCYGHQWFRGRGNWSVSYNHVGHLTEAVVGVVAFSISEVARKTDEHFRGSGISFDKDQSSIPTE 356
            R G      S+AAG + + T W S+ +F F R      +    A LV+    YA  H   D  GS     R +L+ IAE++ + D+E EVE ++   EE  R  W +IR+FEEDT  GAK+L YGIS  NV VY+TY++GR M  A T N ++++FLL+HF LSLGRV++G+WYVLVT NFCH++ WHLVGNSLAT+VGIDLCSSFL+  QI +LF+G  V+GG VSI LSSY RAARYR ++ G SGGI+ALFNFYA AR++D S S LD +DALN+FVILRE+ GL +Y+ +G++        S   NHV HLT AVVG+ AF+ SE  R+ +     S ISF    SSI  E
Sbjct:    8 RIGFRCVRFSIAAGSQSVPTCWSSAKSFRFCRSLFSFKELLCGAVLVSGAQSYAHCHTSGDHPGSKAALFRPDLEQIAEHNFDRDIEIEVEPDKEHLEEGRRSRWMNIRIFEEDTALGAKLLGYGISCCNVVVYITYLVGRYMASASTPNPAVLDFLLKHFTLSLGRVKSGQWYVLVTNNFCHHSSWHLVGNSLATMVGIDLCSSFLDFKQIASLFVGSGVLGGVVSIQLSSYYRAARYRGLIAGGSGGIYALFNFYAFARKKDLSFSQLDIIDALNMFVILREVYGLGIYLRHGYR----ATFLSKPVNHVAHLTGAVVGIAAFAASEAPRRVEAQSSRSVISFSTCSSSIQDE 358          
BLAST of Ggra4062.t1 vs. uniprot
Match: A0A2V3ILS7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILS7_9FLOR)

HSP 1 Score: 99.4 bits (246), Expect = 1.150e-21
Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   66 SSVEGTRFELKIIAENDCNGDMEDEVEVNELLPEERERGLWKDIRVFEEDTEFGAKVLAYGISTINVAVYVTYMLGRCMMRAPTLNHSLMNFLLRHFVLSLGRVRNGRWYVLVTFNFCHYALWHLVGNS 194
            +  E  R E+K  A    N  +EDE+  NE          W++IR+FEEDT+  AK   YG+    VA++  Y+LGR +  A      +++FLLRHFVLS+GRV+ GRWYVL+T  FCHY L H+V + 
Sbjct:    4 TKTEEGRTEMKTDAAKARNSIIEDEMAENEAKSGAWGGTQWRNIRIFEEDTDPNAKAFGYGMVGSYVAIHAAYVLGRSLGSASAQKQLVIDFLLRHFVLSVGRVKKGRWYVLLTHAFCHYRL-HVVASG 131          
The following BLAST results are available for this feature:
BLAST of Ggra4062.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1A01.730e-10851.27Rhomboid domain-containing protein n=1 Tax=Gracila... [more]
A0A2V3ILS71.150e-2143.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035952Rhomboid-like superfamilyGENE3D1.20.1540.10coord: 118..337
e-value: 1.3E-16
score: 62.8
IPR035952Rhomboid-like superfamilySUPERFAMILY144091Rhomboid-likecoord: 123..326
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 170..325
e-value: 1.7E-9
score: 37.8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 243..261
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 296..363
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 276..295
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 262..275
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 232..242
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 192..210
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
NoneNo IPR availableTMHMMTMhelixcoord: 276..295
NoneNo IPR availableTMHMMTMhelixcoord: 122..141
NoneNo IPR availableTMHMMTMhelixcoord: 242..261
NoneNo IPR availableTMHMMTMhelixcoord: 213..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:13944..15035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1Ggra4062.t1Gracilaria gracilis GNS1m malemRNAtig00000853_pilon 13944..15035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MRTGIHRFCLSLAAGCRMLRTDWHSSITFHFDRRFCDLNKPFLVAALVNT
THRYAQSHFEEDSAGSSVEGTRFELKIIAENDCNGDMEDEVEVNELLPEE
RERGLWKDIRVFEEDTEFGAKVLAYGISTINVAVYVTYMLGRCMMRAPTL
NHSLMNFLLRHFVLSLGRVRNGRWYVLVTFNFCHYALWHLVGNSLATIVG
IDLCSSFLNVGQIGALFIGGDVIGGAVSILLSSYLRAARYRTILVGSSGG
IFALFNFYACARRRDSSLSPLDAVDALNIFVILRELSGLALYVCYGHQWF
RGRGNWSVSYNHVGHLTEAVVGVVAFSISEVARKTDEHFRGSGISFDKDQ
SSIPTENQSGVVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035952Rhomboid-like_sf
IPR022764Peptidase_S54_rhomboid_dom