Ggra4062.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4062.t1
Unique NameGgra4062.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:13944..15035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog104355.XP_007862500.1
PFAMsRhomboid
Max annot lvl4751|Fungi
KEGG koko:K09650
Evalue5.2e-06
EggNOG OGsCOG0705@1|root,KOG2980@2759|Eukaryota,3A5ZS@33154|Opisthokonta,3Q6XA@4751|Fungi,3V1S0@5204|Basidiomycota,229G5@155619|Agaricomycetes,3H56E@355688|Agaricomycetes incertae sedis
EC3.4.21.105
DescriptionRhomboid-domain-containing protein
COG categoryT
BRITEko00000,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4062Ggra4062Gracilaria gracilis GNS1m malegenetig00000853_pilon 13944..15035 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1.stop1Ggra4062.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 13944..13946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1.CDS1Ggra4062.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 13944..15035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1.exon1Ggra4062.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 13944..15035 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1.start1Ggra4062.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 15033..15035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4062.t1Ggra4062.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 13944..15035 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MRTGIHRFCLSLAAGCRMLRTDWHSSITFHFDRRFCDLNKPFLVAALVNT
THRYAQSHFEEDSAGSSVEGTRFELKIIAENDCNGDMEDEVEVNELLPEE
RERGLWKDIRVFEEDTEFGAKVLAYGISTINVAVYVTYMLGRCMMRAPTL
NHSLMNFLLRHFVLSLGRVRNGRWYVLVTFNFCHYALWHLVGNSLATIVG
IDLCSSFLNVGQIGALFIGGDVIGGAVSILLSSYLRAARYRTILVGSSGG
IFALFNFYACARRRDSSLSPLDAVDALNIFVILRELSGLALYVCYGHQWF
RGRGNWSVSYNHVGHLTEAVVGVVAFSISEVARKTDEHFRGSGISFDKDQ
SSIPTENQSGVVQ*
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spliced messenger RNA

>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000853_pilon:13944..15035- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACTGGCATTCATCGCTTTTGTCTGTCGTTAGCAGCTGGATGTCG
TATGCTTCGCACGGATTGGCATTCCTCAATTACTTTCCACTTCGATCGGC
GTTTCTGCGATTTGAACAAACCGTTTTTGGTCGCAGCTTTGGTGAATACT
ACTCACCGCTATGCACAGAGTCATTTTGAAGAAGATTCTGCCGGTTCAAG
TGTGGAAGGAACTCGTTTTGAGTTGAAAATCATTGCTGAGAATGACTGTA
ACGGGGACATGGAAGATGAAGTAGAGGTCAATGAGTTACTGCCTGAGGAA
CGCGAAAGGGGGCTTTGGAAAGACATAAGGGTATTTGAGGAAGATACGGA
ATTCGGTGCCAAGGTTCTGGCATACGGTATATCCACCATAAATGTTGCGG
TGTATGTTACTTACATGCTAGGCCGATGCATGATGAGGGCCCCTACACTG
AATCATTCACTCATGAACTTCCTGCTGAGACATTTCGTTCTCAGCCTTGG
ACGGGTCAGGAATGGTCGATGGTACGTCTTGGTCACTTTCAATTTTTGTC
ATTACGCCCTATGGCATCTCGTCGGCAATTCCCTGGCTACTATAGTTGGC
ATCGACCTGTGTTCTTCGTTTCTCAACGTCGGTCAAATCGGTGCCCTTTT
CATCGGAGGTGATGTTATTGGTGGAGCGGTATCGATACTTTTGAGTAGCT
ACCTACGCGCCGCACGCTACAGAACTATTCTCGTTGGCAGTAGTGGAGGG
ATATTCGCCCTGTTCAATTTTTATGCGTGTGCGAGAAGAAGAGACTCATC
TTTATCGCCTCTTGACGCTGTGGACGCACTGAATATCTTCGTTATCTTAC
GTGAATTAAGTGGACTGGCGCTCTATGTCTGCTACGGGCACCAATGGTTC
AGAGGAAGAGGTAACTGGTCAGTAAGCTACAATCACGTTGGTCATCTCAC
AGAGGCCGTCGTAGGGGTCGTTGCGTTTTCCATTTCGGAGGTCGCACGGA
AAACAGACGAACATTTCCGGGGTTCAGGGATCTCCTTCGACAAAGACCAG
TCGAGCATTCCAACTGAAAACCAATCCGGAGTAGTACAATGA
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protein sequence of Ggra4062.t1

>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MRTGIHRFCLSLAAGCRMLRTDWHSSITFHFDRRFCDLNKPFLVAALVNT
THRYAQSHFEEDSAGSSVEGTRFELKIIAENDCNGDMEDEVEVNELLPEE
RERGLWKDIRVFEEDTEFGAKVLAYGISTINVAVYVTYMLGRCMMRAPTL
NHSLMNFLLRHFVLSLGRVRNGRWYVLVTFNFCHYALWHLVGNSLATIVG
IDLCSSFLNVGQIGALFIGGDVIGGAVSILLSSYLRAARYRTILVGSSGG
IFALFNFYACARRRDSSLSPLDAVDALNIFVILRELSGLALYVCYGHQWF
RGRGNWSVSYNHVGHLTEAVVGVVAFSISEVARKTDEHFRGSGISFDKDQ
SSIPTENQSGVVQ*
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mRNA from alignment at tig00000853_pilon:13944..15035-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000853_pilon:13944..15035- (Gracilaria gracilis GNS1m male)
ATGAGAACTGGCATTCATCGCTTTTGTCTGTCGTTAGCAGCTGGATGTCG
TATGCTTCGCACGGATTGGCATTCCTCAATTACTTTCCACTTCGATCGGC
GTTTCTGCGATTTGAACAAACCGTTTTTGGTCGCAGCTTTGGTGAATACT
ACTCACCGCTATGCACAGAGTCATTTTGAAGAAGATTCTGCCGGTTCAAG
TGTGGAAGGAACTCGTTTTGAGTTGAAAATCATTGCTGAGAATGACTGTA
ACGGGGACATGGAAGATGAAGTAGAGGTCAATGAGTTACTGCCTGAGGAA
CGCGAAAGGGGGCTTTGGAAAGACATAAGGGTATTTGAGGAAGATACGGA
ATTCGGTGCCAAGGTTCTGGCATACGGTATATCCACCATAAATGTTGCGG
TGTATGTTACTTACATGCTAGGCCGATGCATGATGAGGGCCCCTACACTG
AATCATTCACTCATGAACTTCCTGCTGAGACATTTCGTTCTCAGCCTTGG
ACGGGTCAGGAATGGTCGATGGTACGTCTTGGTCACTTTCAATTTTTGTC
ATTACGCCCTATGGCATCTCGTCGGCAATTCCCTGGCTACTATAGTTGGC
ATCGACCTGTGTTCTTCGTTTCTCAACGTCGGTCAAATCGGTGCCCTTTT
CATCGGAGGTGATGTTATTGGTGGAGCGGTATCGATACTTTTGAGTAGCT
ACCTACGCGCCGCACGCTACAGAACTATTCTCGTTGGCAGTAGTGGAGGG
ATATTCGCCCTGTTCAATTTTTATGCGTGTGCGAGAAGAAGAGACTCATC
TTTATCGCCTCTTGACGCTGTGGACGCACTGAATATCTTCGTTATCTTAC
GTGAATTAAGTGGACTGGCGCTCTATGTCTGCTACGGGCACCAATGGTTC
AGAGGAAGAGGTAACTGGTCAGTAAGCTACAATCACGTTGGTCATCTCAC
AGAGGCCGTCGTAGGGGTCGTTGCGTTTTCCATTTCGGAGGTCGCACGGA
AAACAGACGAACATTTCCGGGGTTCAGGGATCTCCTTCGACAAAGACCAG
TCGAGCATTCCAACTGAAAACCAATCCGGAGTAGTACAATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:13944..15035-

>Ggra4062.t1 ID=Ggra4062.t1|Name=Ggra4062.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000853_pilon:13944..15035- (Gracilaria gracilis GNS1m male)
ATGAGAACTGGCATTCATCGCTTTTGTCTGTCGTTAGCAGCTGGATGTCG
TATGCTTCGCACGGATTGGCATTCCTCAATTACTTTCCACTTCGATCGGC
GTTTCTGCGATTTGAACAAACCGTTTTTGGTCGCAGCTTTGGTGAATACT
ACTCACCGCTATGCACAGAGTCATTTTGAAGAAGATTCTGCCGGTTCAAG
TGTGGAAGGAACTCGTTTTGAGTTGAAAATCATTGCTGAGAATGACTGTA
ACGGGGACATGGAAGATGAAGTAGAGGTCAATGAGTTACTGCCTGAGGAA
CGCGAAAGGGGGCTTTGGAAAGACATAAGGGTATTTGAGGAAGATACGGA
ATTCGGTGCCAAGGTTCTGGCATACGGTATATCCACCATAAATGTTGCGG
TGTATGTTACTTACATGCTAGGCCGATGCATGATGAGGGCCCCTACACTG
AATCATTCACTCATGAACTTCCTGCTGAGACATTTCGTTCTCAGCCTTGG
ACGGGTCAGGAATGGTCGATGGTACGTCTTGGTCACTTTCAATTTTTGTC
ATTACGCCCTATGGCATCTCGTCGGCAATTCCCTGGCTACTATAGTTGGC
ATCGACCTGTGTTCTTCGTTTCTCAACGTCGGTCAAATCGGTGCCCTTTT
CATCGGAGGTGATGTTATTGGTGGAGCGGTATCGATACTTTTGAGTAGCT
ACCTACGCGCCGCACGCTACAGAACTATTCTCGTTGGCAGTAGTGGAGGG
ATATTCGCCCTGTTCAATTTTTATGCGTGTGCGAGAAGAAGAGACTCATC
TTTATCGCCTCTTGACGCTGTGGACGCACTGAATATCTTCGTTATCTTAC
GTGAATTAAGTGGACTGGCGCTCTATGTCTGCTACGGGCACCAATGGTTC
AGAGGAAGAGGTAACTGGTCAGTAAGCTACAATCACGTTGGTCATCTCAC
AGAGGCCGTCGTAGGGGTCGTTGCGTTTTCCATTTCGGAGGTCGCACGGA
AAACAGACGAACATTTCCGGGGTTCAGGGATCTCCTTCGACAAAGACCAG
TCGAGCATTCCAACTGAAAACCAATCCGGAGTAGTACAATGA
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