Ggra3863.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3863.t1
Unique NameGgra3863.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2260316..2261191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3863Ggra3863Gracilaria gracilis GNS1m malegenetig00000850_pilon 2260316..2261191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3863.t1.stop1Ggra3863.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2260316..2260318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3863.t1.CDS1Ggra3863.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2260316..2261191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3863.t1.exon1Ggra3863.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2260316..2261191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3863.t1.start1Ggra3863.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2261189..2261191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3863.t1Ggra3863.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2260316..2261191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MKLPSLRVRAPRNHSAHLFALAVVIVVGVARGQEIKCSPSANKGQPPAFL
CGALIRVRRETDCSLTVSEKITFPHTVDTKYQRHVYRLADFQRLSNVRVF
LNDSRVRSSLFEDDENSAIIEFETEASTSNKAYTIRYSVSNGALRFSRSC
DGTGGRSFPRDNVIRWRSGIFEEGLDEVIVEFESEEEGKLSFVALDSKFE
SQSASGQIRLLASNVTDEIEAYVRDTGRPLCDEDLICDDSGLGAWIIFLI
VAGAILALVSVFIVFFLLRRKKARPAEIQIVDMETTAVDSA*
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spliced messenger RNA

>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000850_pilon:2260316..2261191- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTCCGTCACTTCGAGTCCGCGCTCCGCGAAACCATTCGGCCCA
TCTTTTCGCGCTTGCCGTTGTCATTGTGGTGGGAGTCGCTCGCGGTCAGG
AAATCAAGTGCAGCCCTTCGGCGAACAAGGGCCAACCACCAGCCTTTCTT
TGCGGTGCTCTTATTAGAGTTCGTCGGGAGACGGATTGCTCGTTGACCGT
CTCCGAGAAGATAACTTTTCCCCACACAGTCGACACAAAGTATCAGCGTC
ATGTATACAGACTTGCCGATTTTCAACGCTTGAGCAACGTAAGAGTTTTT
TTGAACGACAGCAGAGTTCGAAGCTCGCTTTTCGAAGATGATGAGAACAG
TGCTATCATCGAGTTTGAAACAGAAGCTTCAACATCGAACAAAGCGTATA
CAATCAGATACAGTGTGTCTAATGGTGCGTTGCGGTTTAGTAGAAGCTGT
GATGGAACGGGTGGAAGATCATTCCCACGAGACAATGTCATTCGATGGCG
GTCGGGTATATTTGAAGAAGGCTTGGATGAAGTCATCGTGGAGTTTGAAT
CCGAAGAAGAAGGAAAGCTGAGTTTCGTAGCCCTTGACAGCAAATTCGAG
TCGCAAAGCGCATCAGGGCAGATTCGTCTGCTTGCGAGCAACGTGACAGA
TGAGATTGAAGCATATGTGAGAGACACAGGTAGGCCTCTATGCGATGAGG
ATCTGATTTGTGATGACAGTGGACTGGGAGCATGGATCATCTTTCTAATC
GTTGCCGGGGCAATCTTGGCGTTAGTGTCCGTTTTTATTGTGTTCTTCCT
TTTGAGGAGAAAGAAAGCGCGACCCGCAGAGATACAGATTGTGGATATGG
AAACAACAGCAGTGGACTCGGCATGA
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protein sequence of Ggra3863.t1

>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MKLPSLRVRAPRNHSAHLFALAVVIVVGVARGQEIKCSPSANKGQPPAFL
CGALIRVRRETDCSLTVSEKITFPHTVDTKYQRHVYRLADFQRLSNVRVF
LNDSRVRSSLFEDDENSAIIEFETEASTSNKAYTIRYSVSNGALRFSRSC
DGTGGRSFPRDNVIRWRSGIFEEGLDEVIVEFESEEEGKLSFVALDSKFE
SQSASGQIRLLASNVTDEIEAYVRDTGRPLCDEDLICDDSGLGAWIIFLI
VAGAILALVSVFIVFFLLRRKKARPAEIQIVDMETTAVDSA*
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mRNA from alignment at tig00000850_pilon:2260316..2261191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000850_pilon:2260316..2261191- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCCGTCACTTCGAGTCCGCGCTCCGCGAAACCATTCGGCCCA
TCTTTTCGCGCTTGCCGTTGTCATTGTGGTGGGAGTCGCTCGCGGTCAGG
AAATCAAGTGCAGCCCTTCGGCGAACAAGGGCCAACCACCAGCCTTTCTT
TGCGGTGCTCTTATTAGAGTTCGTCGGGAGACGGATTGCTCGTTGACCGT
CTCCGAGAAGATAACTTTTCCCCACACAGTCGACACAAAGTATCAGCGTC
ATGTATACAGACTTGCCGATTTTCAACGCTTGAGCAACGTAAGAGTTTTT
TTGAACGACAGCAGAGTTCGAAGCTCGCTTTTCGAAGATGATGAGAACAG
TGCTATCATCGAGTTTGAAACAGAAGCTTCAACATCGAACAAAGCGTATA
CAATCAGATACAGTGTGTCTAATGGTGCGTTGCGGTTTAGTAGAAGCTGT
GATGGAACGGGTGGAAGATCATTCCCACGAGACAATGTCATTCGATGGCG
GTCGGGTATATTTGAAGAAGGCTTGGATGAAGTCATCGTGGAGTTTGAAT
CCGAAGAAGAAGGAAAGCTGAGTTTCGTAGCCCTTGACAGCAAATTCGAG
TCGCAAAGCGCATCAGGGCAGATTCGTCTGCTTGCGAGCAACGTGACAGA
TGAGATTGAAGCATATGTGAGAGACACAGGTAGGCCTCTATGCGATGAGG
ATCTGATTTGTGATGACAGTGGACTGGGAGCATGGATCATCTTTCTAATC
GTTGCCGGGGCAATCTTGGCGTTAGTGTCCGTTTTTATTGTGTTCTTCCT
TTTGAGGAGAAAGAAAGCGCGACCCGCAGAGATACAGATTGTGGATATGG
AAACAACAGCAGTGGACTCGGCATGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2260316..2261191-

>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000850_pilon:2260316..2261191- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCCGTCACTTCGAGTCCGCGCTCCGCGAAACCATTCGGCCCA
TCTTTTCGCGCTTGCCGTTGTCATTGTGGTGGGAGTCGCTCGCGGTCAGG
AAATCAAGTGCAGCCCTTCGGCGAACAAGGGCCAACCACCAGCCTTTCTT
TGCGGTGCTCTTATTAGAGTTCGTCGGGAGACGGATTGCTCGTTGACCGT
CTCCGAGAAGATAACTTTTCCCCACACAGTCGACACAAAGTATCAGCGTC
ATGTATACAGACTTGCCGATTTTCAACGCTTGAGCAACGTAAGAGTTTTT
TTGAACGACAGCAGAGTTCGAAGCTCGCTTTTCGAAGATGATGAGAACAG
TGCTATCATCGAGTTTGAAACAGAAGCTTCAACATCGAACAAAGCGTATA
CAATCAGATACAGTGTGTCTAATGGTGCGTTGCGGTTTAGTAGAAGCTGT
GATGGAACGGGTGGAAGATCATTCCCACGAGACAATGTCATTCGATGGCG
GTCGGGTATATTTGAAGAAGGCTTGGATGAAGTCATCGTGGAGTTTGAAT
CCGAAGAAGAAGGAAAGCTGAGTTTCGTAGCCCTTGACAGCAAATTCGAG
TCGCAAAGCGCATCAGGGCAGATTCGTCTGCTTGCGAGCAACGTGACAGA
TGAGATTGAAGCATATGTGAGAGACACAGGTAGGCCTCTATGCGATGAGG
ATCTGATTTGTGATGACAGTGGACTGGGAGCATGGATCATCTTTCTAATC
GTTGCCGGGGCAATCTTGGCGTTAGTGTCCGTTTTTATTGTGTTCTTCCT
TTTGAGGAGAAAGAAAGCGCGACCCGCAGAGATACAGATTGTGGATATGG
AAACAACAGCAGTGGACTCGGCATGA
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