Ggra3863.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra3863.t1
Unique Name	Ggra3863.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	292

Homology

[Close]

BLAST of Ggra3863.t1 vs. uniprot
Match: A0A2V3IPD2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPD2_9FLOR)

HSP 1 Score: 232 bits (591), Expect = 4.960e-72
Identity = 123/272 (45.22%), Postives = 175/272 (64.34%), Query Frame = 0

Query:   13 NHSAHLFALAVVIVVGV---ARGQEIKCSPSANKGQPPAFLCGALIRVRRETDCSLTVSEKITFPHTVDTKYQRHVYRLADFQRLSNVRVFLNDSRVRSSLFEDDENSAI-IEFETEASTSNKAYTIRYSVSNGALRFSRSCDGTGGRSFPRDNVIRWRSGIFEEGLDEVIVEFESEEEGKLSFVALDSKFESQSASGQIRLLASNVTDEIEAYVRDTGRPLCDEDLICDDS-GLGAWIIFLIVAGAILALVSVFIVFFLLRRKKARPAEIQ 279
              S H +AL   +V  +   ++ Q++ CS S NK  PP FLCG  + +RR  +CS+ ++E+ITFPHTVD  Y+R + ++ + QR+S+V V  N   V   +  +D N    + F+T+ ST +  Y I+Y +SNGA +FS+ CDGT G+SFP +NVI WRSG  EEG+D + V  ESE  G+L+FV LD +F+SQ  +G +R   +NVT E+E Y R+ G PLC+  L+C +S GL  WIIFLIVAGAILALV+  +  +  +RK  R   +Q
Sbjct:    9 QRSIHCYALVTTLVAVLFTSSQSQDVVCSGSVNKNSPPRFLCGLEVDIRRMDNCSVIITERITFPHTVDAMYERKLRKVPNVQRVSSVLVKQNGESVDFDVSLEDGNDFFPLSFKTKKSTRDSTYDIQYMLSNGAFQFSKKCDGTDGKSFPNNNVIVWRSGEIEEGVDRLNVRMESE--GRLNFVGLDDQFDSQKENGVLRATTTNVTGEVEFYARERGTPLCERKLVCKESRGLRPWIIFLIVAGAILALVAAIVAAWFAKRKFGRGGALQ 278

The following BLAST results are available for this feature:

BLAST of Ggra3863.t1 vs. uniprot

BLAST of Ggra3863.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPD2	4.960e-72	45.22	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 242..268
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 16..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..241
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 269..291
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 28..32
None	No IPR available	TMHMM	TMhelix		coord: 245..267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2260316..2261191 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3863.t1	Ggra3863.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000850_pilon 2260316..2261191 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra3863.t1 ID=Ggra3863.t1|Name=Ggra3863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MKLPSLRVRAPRNHSAHLFALAVVIVVGVARGQEIKCSPSANKGQPPAFL
CGALIRVRRETDCSLTVSEKITFPHTVDTKYQRHVYRLADFQRLSNVRVF
LNDSRVRSSLFEDDENSAIIEFETEASTSNKAYTIRYSVSNGALRFSRSC
DGTGGRSFPRDNVIRWRSGIFEEGLDEVIVEFESEEEGKLSFVALDSKFE
SQSASGQIRLLASNVTDEIEAYVRDTGRPLCDEDLICDDSGLGAWIIFLI
VAGAILALVSVFIVFFLLRRKKARPAEIQIVDMETTAVDSA*