Ggra3687.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3687.t1
Unique NameGgra3687.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra3687.t1 vs. uniprot
Match: A0A2V3ITG4 (Spondin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITG4_9FLOR)

HSP 1 Score: 359 bits (922), Expect = 8.370e-123
Identity = 180/250 (72.00%), Postives = 214/250 (85.60%), Query Frame = 0
Query:   17 PAVARAACEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPIDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSDPYNEGDTLPVETLTA-LETDANLASLSIEQGTLGVSIWKIILGALAAVAVLAAVICVVLPMWRRRKRTAQIPLTTQEGTEW 265
            P +ARA CEG+QSYVLSL+MSFT+ +NPLIP  EKARIPVVVAV+HKPSYHLFE++KKL+D AAEVASAGKAD++K QF  L D  DV SF+IL D+PIDD+SQL+L+VK SASRISLMAQLSPSP+WF+GIDSLDLCQ+S FILER NIRVKNFNSGLD SREFDMS+PYNEG+T+PVE L   ++ D  LA LS+EQGTLGV  WKI+LG L A+AV+    CV++P+WRRR++ A IPLTTQ+GTEW
Sbjct:   18 PHLARADCEGDQSYVLSLQMSFTKAVNPLIPPPEKARIPVVVAVAHKPSYHLFEKAKKLTDQAAEVASAGKADDVKQQFKKLSDKGDVASFQILKDVPIDDLSQLELRVKGSASRISLMAQLSPSPAWFIGIDSLDLCQQSKFILERSNIRVKNFNSGLDRSREFDMSNPYNEGETIPVEPLAGTIDNDDLLAVLSVEQGTLGVDWWKILLGVLVALAVIVVTTCVLIPLWRRRRKRADIPLTTQQGTEW 267          
BLAST of Ggra3687.t1 vs. uniprot
Match: R7QAQ2 (Spondin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAQ2_CHOCR)

HSP 1 Score: 198 bits (503), Expect = 2.540e-59
Identity = 110/247 (44.53%), Postives = 162/247 (65.59%), Query Frame = 0
Query:   20 ARAACEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPIDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREFDMS-DPYNEGDTLPVETLTALETDANLASLSIEQGTLGVSIWKIILGALAAVAVLAAVICVVLPMWRRRKRTAQIPLTTQEGTEW 265
            A  AC+G QSYVLS++ SFT++  P +P  +KARIP+V+AV+H  S++LF +  KL+D  AEVA  G+A+ +  + + L++S  V SF +   +PID++++L+L V+D AS +S++A LSPSP+WF G+   DLC   +FI    ++ + N+N+GL     F  + DPY EG T+ V    +L +D+  A LS+E+G+LGV  WKI LG L AVAV   V   +LP  RR+K T  IPLT  +G +W
Sbjct:   24 ADGACQGRQSYVLSIQTSFTRSTLPTVP--DKARIPLVIAVAHSSSFNLFLKGDKLTDEVAEVAEKGRAELLATRLNALKESGVVSSFSVEEGVPIDEVTKLELTVEDEASLVSIIAPLSPSPAWFAGLSGHDLCNEGEFI-PADSLELVNYNAGLQRGTAFGANVDPYPEGKTIAVGPEESL-SDSVFARLSLEEGSLGVDWWKIFLGVLVAVAVAIVVTVFILPRCRRKK-TTDIPLTAPDGVQW 265          
BLAST of Ggra3687.t1 vs. uniprot
Match: A0A3M6TRL1 (Spondin domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TRL1_POCDA)

HSP 1 Score: 81.3 bits (199), Expect = 9.870e-14
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = 0
Query:    7 VPTLLLVWLLPAVARAA--CEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIP----IDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREF 181
            + TLL V  +  V+  A  C G  +Y LS K ++T+  +P       A    ++  SH   Y ++ R +K S     VA  G+   +K + +            IL   P    +D+++ +Q+KV  + SR+SL++ L+PSP WFVGIDS DLC    +        +  ++SG DS  +F
Sbjct:    5 IGTLLAVLSVVVVSSTAVKCPGTATYTLSWKATWTKANHPNTVLPSSAHFSPLIGCSHSADYIMWRRGQKASSGVKVVAETGQTGTLKGEIESQISGGKALQL-ILPAGPGLGAVDELTSIQVKVTSNFSRVSLISMLAPSPDWFVGIDSHDLCDNGQWRETWNVTMLPPYDSGTDSGLQF 184          
BLAST of Ggra3687.t1 vs. uniprot
Match: uncharacterized protein LOC111336728 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C046473 (uncharacterized protein LOC111336728 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C046473)

HSP 1 Score: 79.7 bits (195), Expect = 1.510e-13
Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 0
Query:   24 CEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIP------IDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREF 181
            C G  +Y LS K  +TQ  +P       A    ++  SH   Y ++ R +K S     VA  G+   ++ + +      D  +++++  +P      + D+  +Q+KV  + SR+SL++ L+PSP WFVGIDS DLC    +        +  ++SG DS ++F
Sbjct:   24 CPGTATYTLSWKADWTQANHPNTALPSNAHFSPLIGCSHSTDYIMWRRGQKASAGVKLVAERGQTGTLRSEIE--SQISDGKAWQLI--LPGSGLGAVGDLPNIQVKVTSNFSRVSLISMLAPSPDWFVGIDSHDLCDNGQWRETWNVTMLPPYDSGTDSGQQF 183          
BLAST of Ggra3687.t1 vs. uniprot
Match: spondin-2-like isoform X1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5574F7 (spondin-2-like isoform X1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5574F7)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-13
Identity = 46/163 (28.22%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   22 AACEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPIDDISQ---LQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREF 181
            A C G  +Y L+ K S+T++ +P  P    A    ++  +H   Y ++ R    S     VA  G+   +K + +  + +  V+   IL    +  + +   + +KV  + SR+SL++ L+PSP WF+GIDS DLC    +        +  ++SG DS   F
Sbjct:   22 AKCPGNANYTLTWKASWTRDNHPNTPLPSGAHFSNLIGCTHGSDYIMWRRGMNASAGVKSVAELGQTGTLKAEIEAQKSTGKVWQL-ILPGYGLGAVEERTGIPVKVTSNFSRVSLISMLAPSPDWFIGIDSHDLCDNGQWRKTWDVTMLPPYDSGTDSEPTF 183          
BLAST of Ggra3687.t1 vs. uniprot
Match: A0A2B4RW61 (Spondin-2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RW61_STYPI)

HSP 1 Score: 77.0 bits (188), Expect = 6.330e-13
Identity = 46/164 (28.05%), Postives = 82/164 (50.00%), Query Frame = 0
Query:   24 CEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIP------IDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREF 181
            C G  +Y LS K  +TQ  +P       A    ++  SH   Y ++ R +K S     VA  G+   ++ + +      D  +++++  +P      + +++ +Q+ V  + SR+SL++ L+PSP WFVGIDS DLC    +        +  ++SG DS ++F
Sbjct:   24 CPGTATYTLSWKADWTQANHPNTALPSNAHFSPLIGCSHSTDYIMWRRGQKASAGVKLVAERGQTGTLRSEIE--SQISDGKAWQLI--LPRSGLGAVGELNNIQVNVTSNFSRVSLISMLAPSPDWFVGIDSHDLCDNGQWRETWNVTMLPPYDSGTDSGQQF 183          
BLAST of Ggra3687.t1 vs. uniprot
Match: A0A3M6TRG0 (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TRG0_POCDA)

HSP 1 Score: 77.0 bits (188), Expect = 1.890e-12
Identity = 46/163 (28.22%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   22 AACEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPIDDISQ---LQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREF 181
            A C G  +Y L+ K S+T++ +P  P    A    ++  +H   Y ++ R    S     VA  G+   +K + +  + +  V+   IL    +  + +   + +KV  + SR+SL++ L+PSP WF+GIDS DLC    +        +  ++SG DS   F
Sbjct:  197 AKCPGNANYTLTWKASWTRDNHPNTPLPSGAHFSNLIGCTHGSDYIMWRRGMNASAGVKSVAELGQTGTLKAEIEAQKSTGKVWQL-ILPGYGLGAVEERTGIPVKVTSNFSRVSLISMLAPSPDWFIGIDSHDLCDNGQWRKTWDVTMLPPYDSGTDSEPTF 358          
BLAST of Ggra3687.t1 vs. uniprot
Match: A0A2B4RQ56 (Spondin-1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQ56_STYPI)

HSP 1 Score: 68.2 bits (165), Expect = 6.750e-10
Identity = 42/165 (25.45%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   24 CEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPID---DISQLQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSD 185
            C G+ +Y L+ + S++   +P       A    ++  +H   Y ++      S     VA  G+   ++ +  + +D++ V+   IL    +    + + +++KV    S++SL++ L PSP W+VGIDS DLC    +        +  ++SG DS  +F+ SD
Sbjct:   24 CPGDVTYTLTWRGSWSTENHPNATLPSGAHFSNLIGCTHGSEYIMWRTGMMASPGVKLVAEEGQTGTLETEIKVQKDAEKVWQV-ILPGFGLGAEAEKTDIEVKVTPDYSKVSLISMLGPSPDWYVGIDSHDLCNDGQWRKTWDVTMLPPYDSGTDSGLQFESSD 187          
BLAST of Ggra3687.t1 vs. uniprot
Match: R7QQA1 (Spondin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQA1_CHOCR)

HSP 1 Score: 65.9 bits (159), Expect = 1.150e-8
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 0
Query:   20 ARAACEGEQSYVLSLKMSFTQNINPLIPSREKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAG--KADEIKHQFDILRDSDDVYSFRI-LHDIPIDDISQ-LQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSD 158
            A A C+G  +Y +S    +T   +P  P  E      +   SH   Y +++  +  S A  +        +DE K + +I  D D++ S+   + D+ ++D S+ L LK+    S IS +AQL PSP WFVGI S D+C  +D
Sbjct:   33 AAAKCKGTINYTVSFTYEWTLQNDPGQPPEEPVGFGRMHCASHNDKYVMWKPQRTASPAIQKFVDQDDDNSDE-KLRNEIEPDKDNILSYNASIRDMVVNDESEDLILKISADFSLISCIAQLVPSPGWFVGIHSRDMCNETD 174          
BLAST of Ggra3687.t1 vs. uniprot
Match: spondin-2a isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019649557 (spondin-2a isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019649557)

HSP 1 Score: 63.9 bits (154), Expect = 4.420e-8
Identity = 60/213 (28.17%), Postives = 96/213 (45.07%), Query Frame = 0
Query:   11 LLVWLLPAVARAACE----------GEQSYVLSLKMSFTQNINPL-IPS-REKARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRDSDDVYSFRILHDIPIDDISQ------LQLKVKDSASRISLMAQLSPSPSWFVGIDSLDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSDPYNEGDTLPVETLTALETDA 205
            LL  LL  V R AC           G  SY++     ++    P   P  R  A+   ++ V+H P + L++   + S      A  G+ADE+  +   +R S  +     +H  P  ++S        ++ V   ASR+SL+ +L PSP WF G+DSLDLC    +   R  + +  +++G DS   F  S P     T P E +T + + +
Sbjct:   47 LLGLLLLLVGRPACHATNAKPCLATGPASYLILFSGQWSSTTFPKQYPLFRPPAQWSKLIVVTHGPPFRLWQEGGRASPGVKRFAEDGQADEVVKELTEIRKS--LKMIHAIHQAP--NVSSGTGRTAARVLVVPRASRLSLLTKLIPSPDWFTGVDSLDLCDGGHW-KPRVTLDLHPYDAGTDSG--FTFSSP--NFPTSPRENITRITSQS 250          
The following BLAST results are available for this feature:
BLAST of Ggra3687.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITG48.370e-12372.00Spondin-2 n=1 Tax=Gracilariopsis chorda TaxID=4483... [more]
R7QAQ22.540e-5944.53Spondin domain-containing protein n=1 Tax=Chondrus... [more]
A0A3M6TRL19.870e-1430.39Spondin domain-containing protein n=2 Tax=Pocillop... [more]
uncharacterized protein LOC111336728 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0464731.510e-1329.27uncharacterized protein LOC111336728 n=1 Tax=Stylo... [more]
spondin-2-like isoform X1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F5574F75.400e-1328.22spondin-2-like isoform X1 n=2 Tax=Pocillopora dami... [more]
A0A2B4RW616.330e-1328.05Spondin-2 n=2 Tax=Stylophora pistillata TaxID=5042... [more]
A0A3M6TRG01.890e-1228.22Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A2B4RQ566.750e-1025.45Spondin-1 n=1 Tax=Stylophora pistillata TaxID=5042... [more]
R7QQA11.150e-832.17Spondin domain-containing protein n=1 Tax=Chondrus... [more]
spondin-2a isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196495574.420e-828.17spondin-2a isoform X2 n=1 Tax=Polypterus senegalus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038678Spondin, N-terminal domain superfamilyGENE3D2.60.40.2130coord: 17..206
e-value: 4.9E-20
score: 74.0
IPR009465Spondin, N-terminalPFAMPF06468Spond_Ncoord: 30..185
e-value: 8.2E-20
score: 71.7
IPR009465Spondin, N-terminalPROSITEPS51020SPONDINcoord: 18..205
score: 20.494087
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 221..246
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 247..265
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..220
NoneNo IPR availableTMHMMTMhelixcoord: 224..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1084985..1085782 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1Ggra3687.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 1084985..1085782 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MRPFSLVPTLLLVWLLPAVARAACEGEQSYVLSLKMSFTQNINPLIPSRE
KARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRD
SDDVYSFRILHDIPIDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDS
LDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSDPYNEGDTLPVETLTA
LETDANLASLSIEQGTLGVSIWKIILGALAAVAVLAAVICVVLPMWRRRK
RTAQIPLTTQEGTEW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038678Spondin_N_sf
IPR009465Spondin_N