Ggra3687.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3687.t1
Unique NameGgra3687.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1084985..1085782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9315.ENSMEUP00000006013
Preferred nameSPON2
PFAMsSpond_N,TSP_1
Max annot lvl33208|Metazoa
GOsGO:0000902,GO:0000904,GO:0001530,GO:0001817,GO:0001819,GO:0002237,GO:0002252,GO:0002376,GO:0002443,GO:0002444,GO:0002448,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002718,GO:0002720,GO:0003674,GO:0003823,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008228,GO:0008289,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009620,GO:0009653,GO:0009987,GO:0010033,GO:0010830,GO:0010935,GO:0016043,GO:0016192,GO:0019730,GO:0019731,GO:0022008,GO:0022603,GO:0022610,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0032496,GO:0032501,GO:0032502,GO:0032675,GO:0032680,GO:0032755,GO:0032760,GO:0032989,GO:0032990,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042742,GO:0043152,GO:0043207,GO:0044421,GO:0045087,GO:0045595,GO:0048468,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051147,GO:0051153,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060142,GO:0060907,GO:0061081,GO:0061564,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071840,GO:0097367,GO:0097485,GO:0098542,GO:0098657,GO:0120036,GO:0120039,GO:1901700,GO:1901701,GO:1901739,GO:1903555,GO:1903557
Evalue2.56e-06
EggNOG OGsKOG3539@1|root,KOG3539@2759|Eukaryota,38FXI@33154|Opisthokonta,3BHFJ@33208|Metazoa,3CWWR@33213|Bilateria,4842B@7711|Chordata,495NH@7742|Vertebrata,3JF6S@40674|Mammalia,4K3RA@9263|Metatheria
DescriptionSpondin 2, extracellular matrix protein
COG categoryW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3687Ggra3687Gracilaria gracilis GNS1m malegenetig00000850_pilon 1084985..1085782 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1.start1Ggra3687.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1084985..1084987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1.CDS1Ggra3687.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1084985..1085782 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1.exon1Ggra3687.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1084985..1085782 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1.stop1Ggra3687.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1085780..1085782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3687.t1Ggra3687.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1084985..1085782 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MRPFSLVPTLLLVWLLPAVARAACEGEQSYVLSLKMSFTQNINPLIPSRE
KARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRD
SDDVYSFRILHDIPIDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDS
LDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSDPYNEGDTLPVETLTA
LETDANLASLSIEQGTLGVSIWKIILGALAAVAVLAAVICVVLPMWRRRK
RTAQIPLTTQEGTEW*
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spliced messenger RNA

>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000850_pilon:1084985..1085782+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCGTTCTCGTTAGTGCCAACGCTGCTGCTTGTATGGCTCCTGCC
CGCCGTCGCACGCGCCGCGTGCGAAGGTGAACAGTCGTACGTGCTTTCCC
TCAAAATGTCCTTTACACAGAATATCAACCCGTTAATCCCGTCGCGTGAA
AAGGCGCGAATCCCCGTGGTGGTCGCCGTGTCACACAAGCCCAGCTACCA
TCTGTTTGAGCGATCGAAGAAGTTGAGTGATGCTGCCGCCGAGGTGGCGT
CTGCCGGAAAGGCTGATGAAATCAAACACCAGTTCGATATCCTGCGTGAC
TCTGATGATGTGTACTCGTTCCGCATACTTCACGATATTCCAATCGATGA
TATTTCGCAGCTGCAGCTCAAAGTCAAGGATTCCGCCTCTAGAATTTCGC
TCATGGCGCAATTGAGCCCTTCTCCTTCCTGGTTTGTTGGTATTGATTCG
TTGGATTTGTGTCAACGATCGGACTTCATTCTGGAACGCCAAAACATTCG
AGTCAAGAATTTCAACTCGGGGCTTGATAGCAGTCGCGAGTTTGATATGT
CCGATCCCTACAATGAGGGTGACACGCTGCCTGTTGAGACTCTCACAGCT
TTGGAAACTGATGCCAACCTTGCTTCATTGTCCATTGAACAAGGAACATT
GGGCGTTAGTATTTGGAAGATCATTTTAGGCGCTCTTGCCGCTGTTGCCG
TTCTTGCTGCCGTTATTTGCGTGGTTCTCCCTATGTGGCGGAGAAGGAAG
AGGACTGCCCAAATTCCTCTCACCACTCAGGAAGGAACGGAATGGTAA
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protein sequence of Ggra3687.t1

>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MRPFSLVPTLLLVWLLPAVARAACEGEQSYVLSLKMSFTQNINPLIPSRE
KARIPVVVAVSHKPSYHLFERSKKLSDAAAEVASAGKADEIKHQFDILRD
SDDVYSFRILHDIPIDDISQLQLKVKDSASRISLMAQLSPSPSWFVGIDS
LDLCQRSDFILERQNIRVKNFNSGLDSSREFDMSDPYNEGDTLPVETLTA
LETDANLASLSIEQGTLGVSIWKIILGALAAVAVLAAVICVVLPMWRRRK
RTAQIPLTTQEGTEW*
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mRNA from alignment at tig00000850_pilon:1084985..1085782+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000850_pilon:1084985..1085782+ (Gracilaria gracilis GNS1m male)
ATGCGTCCGTTCTCGTTAGTGCCAACGCTGCTGCTTGTATGGCTCCTGCC
CGCCGTCGCACGCGCCGCGTGCGAAGGTGAACAGTCGTACGTGCTTTCCC
TCAAAATGTCCTTTACACAGAATATCAACCCGTTAATCCCGTCGCGTGAA
AAGGCGCGAATCCCCGTGGTGGTCGCCGTGTCACACAAGCCCAGCTACCA
TCTGTTTGAGCGATCGAAGAAGTTGAGTGATGCTGCCGCCGAGGTGGCGT
CTGCCGGAAAGGCTGATGAAATCAAACACCAGTTCGATATCCTGCGTGAC
TCTGATGATGTGTACTCGTTCCGCATACTTCACGATATTCCAATCGATGA
TATTTCGCAGCTGCAGCTCAAAGTCAAGGATTCCGCCTCTAGAATTTCGC
TCATGGCGCAATTGAGCCCTTCTCCTTCCTGGTTTGTTGGTATTGATTCG
TTGGATTTGTGTCAACGATCGGACTTCATTCTGGAACGCCAAAACATTCG
AGTCAAGAATTTCAACTCGGGGCTTGATAGCAGTCGCGAGTTTGATATGT
CCGATCCCTACAATGAGGGTGACACGCTGCCTGTTGAGACTCTCACAGCT
TTGGAAACTGATGCCAACCTTGCTTCATTGTCCATTGAACAAGGAACATT
GGGCGTTAGTATTTGGAAGATCATTTTAGGCGCTCTTGCCGCTGTTGCCG
TTCTTGCTGCCGTTATTTGCGTGGTTCTCCCTATGTGGCGGAGAAGGAAG
AGGACTGCCCAAATTCCTCTCACCACTCAGGAAGGAACGGAATGGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1084985..1085782+

>Ggra3687.t1 ID=Ggra3687.t1|Name=Ggra3687.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000850_pilon:1084985..1085782+ (Gracilaria gracilis GNS1m male)
ATGCGTCCGTTCTCGTTAGTGCCAACGCTGCTGCTTGTATGGCTCCTGCC
CGCCGTCGCACGCGCCGCGTGCGAAGGTGAACAGTCGTACGTGCTTTCCC
TCAAAATGTCCTTTACACAGAATATCAACCCGTTAATCCCGTCGCGTGAA
AAGGCGCGAATCCCCGTGGTGGTCGCCGTGTCACACAAGCCCAGCTACCA
TCTGTTTGAGCGATCGAAGAAGTTGAGTGATGCTGCCGCCGAGGTGGCGT
CTGCCGGAAAGGCTGATGAAATCAAACACCAGTTCGATATCCTGCGTGAC
TCTGATGATGTGTACTCGTTCCGCATACTTCACGATATTCCAATCGATGA
TATTTCGCAGCTGCAGCTCAAAGTCAAGGATTCCGCCTCTAGAATTTCGC
TCATGGCGCAATTGAGCCCTTCTCCTTCCTGGTTTGTTGGTATTGATTCG
TTGGATTTGTGTCAACGATCGGACTTCATTCTGGAACGCCAAAACATTCG
AGTCAAGAATTTCAACTCGGGGCTTGATAGCAGTCGCGAGTTTGATATGT
CCGATCCCTACAATGAGGGTGACACGCTGCCTGTTGAGACTCTCACAGCT
TTGGAAACTGATGCCAACCTTGCTTCATTGTCCATTGAACAAGGAACATT
GGGCGTTAGTATTTGGAAGATCATTTTAGGCGCTCTTGCCGCTGTTGCCG
TTCTTGCTGCCGTTATTTGCGTGGTTCTCCCTATGTGGCGGAGAAGGAAG
AGGACTGCCCAAATTCCTCTCACCACTCAGGAAGGAACGGAATGGTAA
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